Centro de Bioinnovación Antofagasta (CBIA)/Facultad de Ciencias del mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile.
PeerJ. 2024 Nov 15;12:e18305. doi: 10.7717/peerj.18305. eCollection 2024.
In the present study, nine Enterobacteriaceae species present in wastewater were isolated and identified, and loop-mediated isothermal amplification (LAMP) was developed for the detection of Enterobacteriaceae by designing primers based on the mcr-1, KPC, OXA-23, and VIM genes, which are recognized markers of antimicrobial resistance (AMR) transmission during microalgal bioremediation treatment. The developed assays successfully detected four strains positive for mcr-1 gene-asociated resistance (, , , and ), three strains for KPC gene-associated resistance ( sp., 15499, and ), seven strains for OXA-23 gene-associated resistance (, , , 15922, 51446, , and ), and three strains for resistance to the VIM gene-associated resistance (, sp., and ) from a single colony. A reduction in microbiological load of 93.6% was achieved at 15 colony-forming units (CFU) mL, utilizing EMB agar and LAMP values of 0.142 ± 0.011 for the mcr-1 gene, 0.212 ± 0.02 for the KPC gene, 0.233 ± 0.006 for the OXA-23 gene, and 0.219 ± 0.035 for the VIM gene. Furthermore, bioremediation efficiency values of 71.6% and 75% for total nitrogen and phosphorus, respectively, were observed at 72 h of treatment in open pond microalgal remediation systems (MRS). This study demonstrated that the LAMP technique is faster and more sensitive than traditional detection methods, such as CFU, for Enterobacteriaceae. Consequently, this method may be considered for the detection of microbiological quality indicators within the water treatment industry.
在本研究中,从废水中分离鉴定了 9 种肠杆菌科细菌,并基于 mcr-1、KPC、OXA-23 和 VIM 基因设计引物,开发了用于检测肠杆菌科的环介导等温扩增(LAMP)技术。这些基因是微藻生物修复处理过程中抗微生物药物耐药性(AMR)传播的公认标志物。开发的检测方法成功地检测到了四个 mcr-1 基因相关耐药性阳性菌株( 、 、 、 )、三个 KPC 基因相关耐药性菌株( sp.、 15499、 )、七个 OXA-23 基因相关耐药性菌株( 、 、 、 15922、 51446、 、 )和三个 VIM 基因相关耐药性菌株( 、 sp.、 ),这些菌株均来自单个菌落。在 15 个菌落形成单位(CFU)mL 时,利用 EMB 琼脂和 LAMP 可使微生物负荷降低 93.6%,mcr-1 基因的 LAMP 值为 0.142 ± 0.011,KPC 基因的 LAMP 值为 0.212 ± 0.02,OXA-23 基因的 LAMP 值为 0.233 ± 0.006,VIM 基因的 LAMP 值为 0.219 ± 0.035。此外,在开放式池塘微藻修复系统(MRS)中处理 72 h 时,总氮和总磷的生物修复效率分别达到了 71.6%和 75%。本研究表明,LAMP 技术比 CFU 等传统检测方法更快、更敏感。因此,该方法可用于检测水处理行业的微生物质量指标。