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热应激诱导猪肠道炎症的转录组学分析的见解与启示。

Insights and implications for transcriptomic analysis of heat stress-induced intestinal inflammation in pigs.

机构信息

College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524088, China.

Department of Pharmacology, Faculty of Veterinary Medicine, Cairo University, Giza, 12211, Egypt.

出版信息

BMC Genomics. 2024 Nov 19;25(1):1110. doi: 10.1186/s12864-024-10928-5.

Abstract

BACKGROUND

Heat stress (HS) can affect the physiology and metabolism of animals. HS-induced intestinal inflammation in pigs is a common disease, causing severe diarrhea, that can result in substantial economic losses to the pig industry, but the molecular mechanisms and pathogenicity of this disease are not fully understood. The objective of this study was to identify the differentially expressed genes (DEGs) and long noncoding RNAs (DELs) related to inflammation in the colon tissues of pigs under constant (1, 7, and 14 days) HS.

RESULTS

LncRNA and targeted gene interaction networks were constructed. GO annotation and KEGG pathway analyses were subsequently performed to determine the functions of the DEGs and DELs. The results revealed 57, 212, and 54 DEGs and 87, 79, and 55 DELs in the CON/H01, CON/H07, and CON/H14 groups, respectively. KRT85, CLDN1, S100A12, TM7SF2, CCN1, NR4A1, and several lncRNAs may be involved in regulating the development of intestinal inflammation. GO analysis indicated that the DEGs and DELs were enriched in a series of biological processes involved in the innate immune response, RAGE receptor binding, and positive regulation of the ERK1 and ERK2 cascades. KEGG pathways related to inflammation, such as the tight junction (TJ) and MAPK signaling pathways, were enriched in DEGs and DELs.

CONCLUSIONS

This study have expanded the knowledge about colon inflammation-related genes and lncRNA biology in pigs under HS; analyzed the the lncRNA‒mRNA interaction for HS-induced intestinal inflammation. These results may provide some references for our understanding of the molecular mechanism of the intestinal response to HS in pig.

摘要

背景

热应激(HS)会影响动物的生理和代谢。HS 引起的猪肠道炎症是一种常见疾病,会导致严重腹泻,给养猪业造成巨大的经济损失,但该疾病的分子机制和发病机制尚未完全阐明。本研究旨在鉴定在持续(1、7 和 14 天)HS 下猪结肠组织中与炎症相关的差异表达基因(DEGs)和长链非编码 RNA(DELs)。

结果

构建了 lncRNA 和靶向基因互作网络。随后进行了 GO 注释和 KEGG 通路分析,以确定 DEGs 和 DELs 的功能。结果显示,CON/H01、CON/H07 和 CON/H14 组分别有 57、212 和 54 个 DEGs 和 87、79 和 55 个 DELs。KRT85、CLDN1、S100A12、TM7SF2、CCN1、NR4A1 和几个 lncRNAs 可能参与调节肠道炎症的发展。GO 分析表明,DEGs 和 DELs 富集于涉及固有免疫反应、RAGE 受体结合以及 ERK1 和 ERK2 级联的正调控等一系列生物学过程中。与炎症相关的 KEGG 通路,如紧密连接(TJ)和 MAPK 信号通路,在 DEGs 和 DELs 中富集。

结论

本研究扩展了我们对 HS 下猪结肠炎症相关基因和 lncRNA 生物学的认识;分析了 HS 诱导的肠道炎症中 lncRNA-mRNA 互作。这些结果可能为我们理解猪肠道对 HS 的反应的分子机制提供一些参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d627/11577645/67ccc1dfcad6/12864_2024_10928_Fig1_HTML.jpg

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