Acosta-Uribe Juliana, Piña Escudero Stefanie D, Cochran J Nicholas, Taylor Jared W, Castruita P Alejandra, Jonson Caroline, Barinaga Erin A, Roberts Kevin, Levine Alexandra R, George Dawwod S, ÁvilaFunes José Alberto, Behrens María I, Bruno Martín A, Brusco Luis I, Custodio Nilton, Duran-Aniotz Claudia, Lopera Francisco, Matallana Diana L, Slachevsky Andrea, Takada Leonel T, Zapata-Restrepo Lina M, Durón-Reyes Dafne E, de Paula França Resende Elisa, Gelvez Nancy, Godoy Maria E, Maito Marcelo A, Javandel Shireen, Miller Bruce L, Nalls Mike A, Leonard Hampton, Vitale Dan, Bandres-Ciga Sara, Koretsky Mathew J, Singleton Andrew B, Pantazis Caroline B, Valcour Victor, Ibañez Agustin, Kosik Kenneth S, Yokoyama Jennifer S
Grupo de Neurociencias de Antioquia (GNA), Facultad de Medicina, Universidad de Antioquia. Medellín, Colombia.
Neuroscience Research Institute and Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara. Santa Barbara, USA.
medRxiv. 2024 Nov 1:2024.10.29.24315197. doi: 10.1101/2024.10.29.24315197.
Latin America's diverse genetic makeup, shaped by centuries of admixture, presents a unique opportunity to study Alzheimer's disease dementia (AD) and frontotemporal dementia (FTD). Our aim is to identify genetic variations associated with AD and FTD within this population.
The Multi-Partner Consortium to Expand Dementia Research in Latin America (ReDLat) recruited 2,162 participants with AD, FTD, and healthy controls from six Latin American countries (Argentina, Brazil, Chile, Colombia, Mexico, and Peru). All participants underwent array, exome, and/or whole-genome sequencing. Population structure was analyzed using Principal Component Analysis and ADMIXTURE, projecting the ReDLat population onto the 1000 Genomes Project database. To identify genes associated with autosomal dominant, autosomal recessive, or X-linked forms of adult-onset dementia, we searched the Online Mendelian Inheritance in Man database and analyzed pedigree information. Variant interpretation followed guidelines from the American College of Medical Genetics and Genomics, and the Guerreiro algorithm was applied for the and genes.
Global ancestry analysis of the ReDLat cohort revealed a predominant mix of American, African, and European ancestries. Uniquely, Brazil displayed an additional East Asian component accurately reflecting the historical admixture patterns from this region. We identified 17 pathogenic variants, a pathogenic expansion, and 44 variants of uncertain significance. Among our cohort, 70 families exhibited autosomal dominant inheritance of neurodegenerative diseases, with 48 families affected by AD and 22 by FTD. In families with AD, We discovered a novel variant in the gene, c.519G>T (p.Leu173Phe), along with other previously described variants seen in the region, such as c.356C>T (p.Thr119Ile). In families with FTD, the most commonly associated gene was , followed by . Notably, we identified a patient meeting criteria for FTD who carried a pathogenic variant in , c.388G>A (p.Phe21Leu), which had previously been reported in another FTD patient from the same geographical region.
This study provides the first snapshot of genetic contributors to AD and FTD in a multisite cohort across Latin America. It will be critical to evaluate the generalizability of genetic risk factors for AD and FTD across diverse ancestral backgrounds, considering distinct social determinants of health and accounting for modifiable risk factors that may influence disease risk and resilience across different cultures.
经过数百年的基因混合,拉丁美洲形成了多样的基因构成,这为研究阿尔茨海默病性痴呆(AD)和额颞叶痴呆(FTD)提供了独特的机会。我们的目标是在该人群中识别与AD和FTD相关的基因变异。
拉丁美洲扩大痴呆症研究多伙伴联盟(ReDLat)从六个拉丁美洲国家(阿根廷、巴西、智利、哥伦比亚、墨西哥和秘鲁)招募了2162名患有AD、FTD的参与者以及健康对照者。所有参与者均接受了基因芯片、外显子组和/或全基因组测序。使用主成分分析和ADMIXTURE软件分析群体结构,将ReDLat群体投射到千人基因组计划数据库上。为了识别与常染色体显性、常染色体隐性或X连锁形式的成年期痴呆相关的基因,我们搜索了《人类孟德尔遗传在线》数据库并分析了系谱信息。变异解读遵循美国医学遗传学与基因组学学会的指南,并将格雷罗算法应用于 和 基因。
对ReDLat队列的全球祖先分析显示,主要有美洲、非洲和欧洲祖先的混合。独特的是,巴西显示出额外的东亚成分,准确反映了该地区的历史混合模式。我们识别出17个致病变异、1个致病的 扩增以及44个意义未明的变异。在我们的队列中,70个家庭表现出神经退行性疾病的常染色体显性遗传,其中48个家庭受AD影响,22个家庭受FTD影响。在患有AD的家庭中,我们在 基因中发现了一个新变异,c.519G>T(p.Leu173Phe),以及该地区之前描述过的其他变异,如c.356C>T(p.Thr119Ile)。在患有FTD的家庭中,最常相关的基因是 ,其次是 。值得注意的是,我们识别出一名符合FTD标准的患者,其携带 基因中的一个致病变异,c.388G>A(p.Phe21Leu),该变异此前在来自同一地理区域的另一名FTD患者中已有报道。
本研究提供了拉丁美洲多中心队列中AD和FTD基因贡献者的首张快照。考虑到不同的健康社会决定因素,并考虑到可能影响不同文化中疾病风险和恢复力的可改变风险因素,评估AD和FTD基因风险因素在不同祖先背景中的普遍性至关重要。