Sood Ankush, Mandal Pradeep K, Ottelé Jim, Wu Juntian, Eleveld Marcel, Hatai Joydev, Pappas Charalampos G, Huc Ivan, Otto Sijbren
Centre for Systems Chemistry, Stratingh Institute for Chemistry, Nijenborgh 3, 9747 AGGroningen,The Netherlands.
Department of Pharmacy, Ludwig-Maximilians-Universität München, Butenandstraße 5-13, D-81377Munich, Germany.
J Am Chem Soc. 2024 Dec 11;146(49):33386-33394. doi: 10.1021/jacs.4c09111. Epub 2024 Nov 26.
Systems chemistry has emerged as a useful paradigm to access structures and phenomena typically exhibited by living systems, including complex molecular systems such as self-replicators and foldamers. As we progress further toward the noncovalent synthesis of life-like systems, and eventually life itself, it is necessary to gain control over assembly pathways. Dissipative chemical fueling has enabled access to stable populations of (self-assembled) structures that would normally form only transiently. Here, we report a synthetic dynamic combinatorial library, made from a single structurally simple building block, from which a self-replicator and a foldamer can emerge along two distinct and competing pathways through an inter- or intramolecular assembly process, respectively. A fueled chemical reaction cycle is then set up to generate the foldamer transiently, in the presence of the self-replicator. The partitioning of the building block between the folding and self-replication pathways and the duration of the fueled reaction cycles are controlled by adjusting the amount of the chemical fuel. An out-of-equilibrium steady state involving the two assemblies could also be achieved by using a continuous stirred tank reactor with inflow and outflow of material. This work connects the domains of folding and self-replication in synthetic systems through dissipative out-of-equilibrium chemistry. It demonstrates that foldamers and self-replicators, formed from the same building block, can stably coexist if the system is continuously supplied with energy, while at equilibrium, the Gibbs phase rule prohibits such coexistence.
系统化学已成为一种有用的范式,用于研究生命系统通常表现出的结构和现象,包括诸如自我复制分子和折叠体等复杂分子系统。随着我们进一步迈向类生命系统的非共价合成,并最终实现生命本身的合成,有必要控制组装途径。耗散化学供能使我们能够获得通常仅短暂形成的(自组装)结构的稳定群体。在此,我们报告了一个由单一结构简单的构建单元制成的合成动态组合库,通过分子间或分子内组装过程,一个自我复制分子和一个折叠体可以分别沿着两条不同且相互竞争的途径从中出现。然后建立一个供能化学反应循环,在自我复制分子存在的情况下短暂生成折叠体。通过调节化学燃料的量,可以控制构建单元在折叠和自我复制途径之间的分配以及供能反应循环的持续时间。使用具有物料流入和流出的连续搅拌釜式反应器,也可以实现涉及这两种组装的非平衡稳态。这项工作通过耗散非平衡化学将合成系统中的折叠和自我复制领域联系起来。它表明,如果系统持续供应能量,由相同构建单元形成的折叠体和自我复制分子可以稳定共存,而在平衡状态下,吉布斯相律禁止这种共存。