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生命的从头合成方法。

An Approach to the De Novo Synthesis of Life.

机构信息

Centre for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

出版信息

Acc Chem Res. 2022 Jan 18;55(2):145-155. doi: 10.1021/acs.accounts.1c00534. Epub 2021 Dec 29.

DOI:10.1021/acs.accounts.1c00534
PMID:34964346
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8772268/
Abstract

As the remit of chemistry expands beyond molecules to systems, new synthetic targets appear on the horizon. Among these, life represents perhaps the ultimate synthetic challenge. Building on an increasingly detailed understanding of the inner workings of living systems and advances in organic synthesis and supramolecular chemistry, the de novo synthesis of life (i.e., the construction of a new form of life based on completely synthetic components) is coming within reach. This Account presents our first steps in the journey toward this long-term goal. The synthesis of life requires the functional integration of different subsystems that harbor the different characteristics that are deemed essential to life. The most important of these are self-replication, metabolism, and compartmentalization. Integrating these features into a single system, maintaining this system out of equilibrium, and allowing it to undergo Darwinian evolution should ideally result in the emergence of life. Our journey toward de novo life started with the serendipitous discovery of a new mechanism of self-replication. We found that self-assembly in a mixture of interconverting oligomers is a general way of achieving self-replication, where the assembly process drives the synthesis of the very molecules that assemble. Mechanically induced breakage of the growing replicating assemblies resulted in their exponential growth, which is an important enabler for achieving Darwinian evolution. Through this mechanism, the self-replication of compounds containing peptides, nucleobases, and fully synthetic molecules was achieved. Several examples of evolutionary dynamics have been observed in these systems, including the spontaneous diversification of replicators allowing them to specialize on different food sets, history dependence of replicator composition, and the spontaneous emergence of parasitic behavior. Peptide-based replicator assemblies were found to organize their peptide units in space in a manner that, inadvertently, gives rise to microenvironments that are capable of catalysis of chemical reactions or binding-induced activation of cofactors. Among the reactions that can be catalyzed by the replicators are ones that produce the precursors from which these replicators grow, amounting to the first examples of the assimilation of a proto-metabolism. Operating these replicators in a chemically fueled out-of-equilibrium replication-destruction regime was found to promote an increase in their molecular complexity. Fueling counteracts the inherent tendency of replicators to evolve toward lower complexity (caused by the fact that smaller replicators tend to replicate faster). Among the remaining steps on the road to de novo life are now to assimilate compartmentalization and achieve open-ended evolution of the resulting system. Success in the synthesis of de novo life, once obtained, will have far-reaching implications for our understanding of what life is, for the search for extraterrestrial life, for how life may have originated on earth, and for every-day life by opening up new vistas in the form living technology and materials.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/65d31d45cbff/ar1c00534_0006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/1e7f46151027/ar1c00534_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/56244260f23e/ar1c00534_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/64901b2246b1/ar1c00534_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/3d7f8798d47f/ar1c00534_0004.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6861/8772268/65d31d45cbff/ar1c00534_0006.jpg
摘要

随着化学领域的研究范围从分子扩展到系统,新的合成目标出现在地平线上。在这些目标中,生命可能代表着终极的合成挑战。基于对生命系统内部运作的日益深入的了解以及有机合成和超分子化学的进步,生命的从头合成(即在完全合成的组件基础上构建新的生命形式)正在成为可能。本综述介绍了我们朝着这一长期目标迈出的第一步。生命的合成需要不同子系统的功能整合,这些子系统具有被认为是生命所必需的不同特征。其中最重要的是自我复制、代谢和区隔化。将这些特征整合到一个单一的系统中,使该系统保持非平衡状态,并允许其经历达尔文式进化,这应该会导致生命的出现。我们迈向从头合成生命的旅程始于自我复制新机制的偶然发现。我们发现,在相互转化的低聚物混合物中的自组装是实现自我复制的一种通用方式,其中组装过程驱动了组装分子的合成。正在生长的复制组装体的机械诱导断裂导致了它们的指数增长,这是实现达尔文进化的重要促成因素。通过这种机制,实现了包含肽、碱基和全合成分子的化合物的自我复制。在这些系统中观察到了几个进化动态的例子,包括复制子的自发多样化,使它们能够专门针对不同的食物组;复制子组成的历史依赖性;以及寄生行为的自发出现。发现基于肽的复制组装体以一种不经意的方式在空间中组织它们的肽单元,从而产生能够催化化学反应或结合诱导激活辅因子的微环境。可以由复制体催化的反应之一是产生这些复制体生长的前体的反应,这相当于原代谢同化的第一个例子。在化学燃料驱动的非平衡复制-破坏体系中操作这些复制体被发现促进了它们的分子复杂性的增加。燃料的作用抵消了复制体朝着更低复杂性进化的固有趋势(这是由较小的复制体往往复制更快的事实引起的)。在从头合成生命的道路上的其余步骤现在是吸收区隔化并实现由此产生的系统的无限制进化。一旦成功合成出从头合成的生命,将对我们对生命本质的理解、对寻找外星生命的理解、对生命在地球上如何起源的理解以及对日常生活产生深远的影响,因为它开辟了活技术和材料的新视野。

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