Lou Tong, Zhuang Xueqiang, Chang Jiangfan, Gao Yali, Bai Xiuqin
School of Marine Engineering, Jimei University, Xiamen 361021, China.
Fujian Institute of Innovation for Marine Equipment Detection and Remanufacturing Industrial Technology, Xiamen 361021, China.
J Funct Biomater. 2024 Oct 25;15(11):315. doi: 10.3390/jfb15110315.
Antimicrobial peptide (AMP) surfaces are widely used to inhibit biofilm formation and bacterial infection. However, endpoint-immobilized AMPs on surfaces are totally different from free-state AMPs due to the constraints of the surface. In this work, the interactions between AMPs and bacterial cell membranes were analyzed through coarse-grained molecular dynamics and all-atom molecular dynamics simulations. This AMP disrupted membrane structure by altering the thickness and curvature of the membrane. Furthermore, the effect of surface-immobilized states of AMPs on their ability to disrupt membrane structure was revealed. The immobilized AMPs in the freeze-N system could bind to the membrane and disrupt the membrane structure through electrostatic forces between positively charged N-terminal amino acid residues and the negatively charged membrane, while the immobilized AMPs in the freeze-C system were repelled. The results will aid in the rational design of new AMP surfaces with enhanced efficacy and stability.
抗菌肽(AMP)表面被广泛用于抑制生物膜形成和细菌感染。然而,由于表面的限制,表面上终点固定的AMP与游离态AMP完全不同。在这项工作中,通过粗粒度分子动力学和全原子分子动力学模拟分析了AMP与细菌细胞膜之间的相互作用。这种AMP通过改变膜的厚度和曲率破坏膜结构。此外,还揭示了AMP的表面固定状态对其破坏膜结构能力的影响。冷冻-N系统中固定的AMP可以通过带正电的N端氨基酸残基与带负电的膜之间的静电力与膜结合并破坏膜结构,而冷冻-C系统中固定的AMP则被排斥。这些结果将有助于合理设计具有更高功效和稳定性的新型AMP表面。