School of Biomedical Sciences and Pharmacy, The University of Newcastle, Newcastle, NSW 2308, Australia.
Precision Medicine Research Program, Hunter Medical Research Institute, Newcastle, NSW 2305, Australia.
Int J Mol Sci. 2024 Nov 20;25(22):12459. doi: 10.3390/ijms252212459.
Oxidative stress from environmental exposures is thought to play a role in neurodevelopmental disorders; therefore, understanding the underlying molecular regulatory network is essential for mitigating its impacts. In this study, we analysed the competitive endogenous RNA (ceRNA) network mediated by circRNAs, a novel class of regulatory molecules, in an SH-SY5Y cell model of oxidative stress, both prior to and during neural differentiation, using RNA sequencing and in silico analysis. We identified 146 differentially expressed circRNAs, including 93 upregulated and 53 downregulated circRNAs, many of which were significantly co-expressed with mRNAs that potentially interact with miRNAs. We constructed a circRNA-miRNA-mRNA network and identified 15 circRNAs serving as hubs within the regulatory axes, with target genes enriched in stress- and neuron-related pathways, such as , , , and the . These findings provide insights into the role of the circRNA-mediated ceRNA network in oxidative stress during neuronal differentiation, which may help explain the regulatory mechanisms underlying neurodevelopmental disorders associated with oxidative stress.
环境暴露引起的氧化应激被认为在神经发育障碍中起作用;因此,了解其潜在的分子调控网络对于减轻其影响至关重要。在这项研究中,我们使用 RNA 测序和计算机分析,分析了氧化应激 SH-SY5Y 细胞模型中,神经分化前后,circRNA 这一新型调控分子介导的竞争性内源性 RNA (ceRNA) 网络。我们鉴定了 146 个差异表达的 circRNA,包括 93 个上调和 53 个下调的 circRNA,其中许多与可能与 miRNA 相互作用的 mRNAs 显著共表达。我们构建了 circRNA-miRNA-mRNA 网络,并鉴定了 15 个作为调控轴内枢纽的 circRNA,其靶基因富集在应激和神经元相关通路中,如,,, 和. 这些发现为 circRNA 介导的 ceRNA 网络在神经元分化过程中氧化应激中的作用提供了新的认识,这可能有助于解释与氧化应激相关的神经发育障碍的调控机制。