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铁载体-ABC 转运蛋白的底物诱导结构动态及进化关联。

Substrate-Induced Structural Dynamics and Evolutionary Linkage of Siderophore-Iron ABC Transporters of .

机构信息

Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Jouf University, Sakaka 72388, Aljouf, Saudi Arabia.

Department of Pathology, College of Medicine, Qassim University, Buraidah 51452, Qassim, Saudi Arabia.

出版信息

Medicina (Kaunas). 2024 Nov 18;60(11):1891. doi: 10.3390/medicina60111891.

Abstract

: ATP-binding cassette (ABC) transporters are prominent drug targets due to their highly efficient trafficking capabilities and their significant physiological and clinical roles. Gaining insight into their biophysical and biomechanistic properties is crucial to maximize their pharmacological potential. : In this study, we present the biochemical and biophysical characterization, and phylogenetic analysis of the domains of () ABC transporters: the exporter Rv1348 (IrtA) and the importer system Rv1349-Rv2895c (IrtB-Rv2895c), both involved in siderophore-mediated iron uptake. : Our findings reveal that the substrate-binding domain (SBD) of IrtA functions as an active monomer, while Rv2895c, which facilitates the uptake of siderophore-bound iron, exists in a dynamic equilibrium between dimeric and monomeric forms. Furthermore, ATP binding induces the dimerization of the ATPase domains in both IrtA (ATPase I) and IrtB (ATPaseII), but only the ATPase domain of IrtA (ATPase I) is active independently. We also analyzed the stability of substrate binding to the domains of the two transporters across varying temperature and pH ranges, revealing significant shifts in their activity under different conditions. Our study highlights the conformational changes that accompany substrate interaction with the transporter domains, providing insights into the fundamental mechanism required for the translocation of siderophore to the extracytoplasmic milieu by IrtB and, subsequently, import of their ferrated forms by the IrtB-Rv2895c complex. Phylogenetic analyses based on ATPase domains reveal that IrtA shares features with both archaeal and eukaryotic transporters, while IrtB is unique to mycobacterial species. : Together, these findings provide valuable insights, which could accelerate the development of intervention strategies for this critical pathway pivotal in the progression of infection.

摘要

: ATP 结合盒(ABC)转运蛋白因其高效的转运能力及其在生理和临床方面的重要作用而成为重要的药物靶点。深入了解其生物物理和生物力学特性对于最大限度地发挥其药理学潜力至关重要。: 在这项研究中,我们对涉及铁载体介导摄取的 ABC 转运蛋白 exporter Rv1348(IrtA)和 importer 系统 Rv1349-Rv2895c(IrtB-Rv2895c)的结构域进行了生化和生物物理特性分析以及系统发育分析。: 我们的研究结果表明,IrtA 的底物结合结构域(SBD)作为活性单体发挥作用,而 Rv2895c 则存在于二聚体和单体形式之间的动态平衡中,促进了铁载体结合铁的摄取。此外,ATP 结合诱导 IrtA(ATPase I)和 IrtB(ATPase II)的 ATP 酶结构域二聚化,但只有 IrtA(ATPase I)的 ATP 酶结构域可以独立地发挥活性。我们还分析了两种转运蛋白的结构域在不同温度和 pH 值范围内与底物结合的稳定性,揭示了它们在不同条件下活性的显著变化。我们的研究强调了伴随底物与转运蛋白结构域相互作用的构象变化,为理解 IrtB 将铁载体转运到细胞外环境以及随后由 IrtB-Rv2895c 复合物摄取其 ferrated 形式所需的基本机制提供了见解。基于 ATP 酶结构域的系统发育分析表明,IrtA 与古菌和真核转运蛋白具有共同特征,而 IrtB 则是分枝杆菌物种所特有的。: 总之,这些发现提供了有价值的见解,这可能会加速针对该关键途径的干预策略的发展,该途径在结核分枝杆菌感染的进展中起着关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3e5/11596928/54fdb0593663/medicina-60-01891-g001.jpg

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