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沙特阿拉伯国王萨勒曼·本·阿卜杜勒阿齐兹皇家自然保护区塔布克地区天然湖泊和人工供水点沉积物细菌多样性与组成的宏基因组分析

Metagenomic Analysis of Sediment Bacterial Diversity and Composition in Natural Lakes and Artificial Waterpoints of Tabuk Region in King Salman Bin Abdulaziz Royal Natural Reserve, Saudi Arabia.

作者信息

Al-Awthan Yahya S, Mir Rashid, Alharbi Basmah M, Alatawi Abdulaziz S, Almutairi Fahad M, Khafaga Tamer, Shohdi Wael M, Fakhry Amal M, Alatawi Mashari M

机构信息

Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia.

Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia.

出版信息

Life (Basel). 2024 Nov 1;14(11):1411. doi: 10.3390/life14111411.

Abstract

The Tabuk region is located in the northern part of Saudi Arabia, and it has an area of 117,000 km between longitudes 26° N and 29° N and latitudes 34° E and 38° E. King Salman Bin Abdulaziz Royal Natural Reserve (KSRNR) is the largest natural reserve in Saudi Arabia and covers about 130,700 km. It represents a new tourist attraction area in the Tabuk region. Human activities around the lake may lead to changes in water quality, with subsequent changes in microenvironment components, including microbial diversity. The current study was designed to assess possible changes in bacterial communities of the water sediment at some natural lakes and artificial waterpoints of KSRNR. Water samples were collected from ten different locations within KSRNR: W1, W2, W3 (at the border of the royal reserve); W4, W5, W6, W7 (at the middle); and W8, W9, and W10 (artificial waterpoints). The total DNA of the samples was extracted and subjected to 16S rRNA sequencing and metagenomic analysis; also, the environmental parameters (temperature and humidity) were recorded for all locations. Metagenomic sequencing yielded a total of 24,696 operational taxonomic units (OTUs), which were subsequently annotated to 193 phyla, 215 classes, 445 orders, 947 families, and 3960 genera. At the phylum level, dominated the microbial communities across all samples. At the class level, , , , , and were the most prevalent. The dominant families included , , , , and . At the genus level, , , , , and exhibited the highest relative abundances. The most abundant species were , , , sp. , and sp. . The observed species richness revealed substantial heterogeneity across samples using species richness estimators, Chao1 and ACE, indicating particularly high diversity in samples W3, W5, and W6. Current study results help in recognizing the structure of bacterial communities at the Tubaiq area in relation to their surroundings for planning for environmental protection and future restoration of affected ecosystems. The findings highlight the dominance of various bacterial phyla, classes, families, and genera, with remarkable species richness in some areas. These results underscore the influence of human activities on microbial diversity, as well as the significance of monitoring and conserving the reserve's natural ecosystems.

摘要

塔布克地区位于沙特阿拉伯北部,在北纬26°至29°、东经34°至38°之间,面积为117,000平方千米。萨勒曼·本·阿卜杜勒阿齐兹国王皇家自然保护区(KSRNR)是沙特阿拉伯最大的自然保护区,面积约130,700平方千米。它是塔布克地区一个新的旅游景区。湖泊周边的人类活动可能导致水质变化,进而使包括微生物多样性在内的微环境成分发生改变。本研究旨在评估KSRNR一些天然湖泊和人工供水点水沉积物中细菌群落可能发生的变化。从KSRNR内的十个不同地点采集了水样:W1、W2、W3(位于皇家保护区边界);W4、W5、W6、W7(位于中部);以及W8、W9和W10(人工供水点)。提取样本的总DNA并进行16S rRNA测序和宏基因组分析;同时,记录了所有地点的环境参数(温度和湿度)。宏基因组测序共产生了24,696个可操作分类单元(OTU),随后将其注释到193个门、215个纲、445个目、947个科和3960个属。在门水平上, 在所有样本的微生物群落中占主导地位。在纲水平上, 、 、 、 和 最为普遍。优势科包括 、 、 、 和 。在属水平上, 、 、 、 和 表现出最高的相对丰度。最丰富的物种是 、 、 、 菌属 和 菌属 。使用物种丰富度估计器Chao1和ACE观察到的物种丰富度显示,样本间存在显著的异质性,表明W3、W5和W6样本中的多样性特别高。当前的研究结果有助于了解图拜克地区细菌群落与其周围环境的关系,以便规划环境保护和受影响生态系统的未来恢复。研究结果突出了各种细菌门、纲、科和属的优势,以及某些地区显著的物种丰富度。这些结果强调了人类活动对微生物多样性的影响,以及监测和保护保护区自然生态系统的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d6/11595862/f6bb21e2e41c/life-14-01411-g001a.jpg

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