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调查塔布克地区沿海地区灰红树林中的细菌群落。

Investigating the bacterial community of gray mangroves () in coastal areas of Tabuk region.

机构信息

Department of Biology, Faculty of Science, University of Tabuk, Tabuk, Saudi Arabia.

Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk, Saudi Arabia.

出版信息

PeerJ. 2024 Oct 18;12:e18282. doi: 10.7717/peerj.18282. eCollection 2024.

Abstract

Mangrove vegetation, a threatened and unique inter-tidal ecosystem, harbours a complex and largely unexplored bacterial community crucial for nutrient cycling and the degradation of toxic pollutants in coastal areas. Despite its importance, the bacterial community composition of the gray mangrove () in the Red Sea coastal regions remains under-studied. This study aims to elucidate the structural and functional diversity of the microbiome in the bulk and rhizospheric soils associated with in the coastal areas of Ras Alshabaan-Umluj (Umluj) and Almunibrah-Al-Wajh (Al-Wajh) within the Tabuk region of Saudi Arabia. Amplicon sequencing targeting the 16S rRNA was performed using the metagenomic DNAs from the bulk and rhizospheric soil samples from Umluj and Al-Wajh. A total of 6,876 OTUs were recovered from all samples, of which 1,857 OTUs were common to all locations while the total number of OTUs unique to Al-wajh was higher (3,011 OTUs) than the total number of OTUs observed (1,324 OTUs) at Umluj site. Based on diversity indices, overall bacterial diversity was comparatively higher in rhizospheric soil samples of both sites. Comparing the diversity indices for the rhizosphere samples from the two sites revealed that the diversity was much higher in the rhizosphere samples from Al-Wajh as compared to those from Umluj. The most dominant genera in rhizosphere sample of Al-Wajh were and while the same habitat of the Umluj site was dominated by and . Bacterial functional potential prediction analyses showed that bacteria from two locations have almost similar patterns of functional genes including amino acids and carbohydrates metabolisms, sulfate reduction and C-1 compound metabolism and xenobiotics biodegradation. However, the rhizosphere samples of both sites harbour more genes involved in the utilization and assimilation of C-1 compounds. Our results reveal that bacterial communities inhabiting the rhizosphere of differed significantly from those in the bulk soil, suggesting a possible role of roots in shaping these bacterial communities. Additionally, not only vegetation but also geographical location appears to influence the overall bacterial composition at the two sites.

摘要

红树林植被是一种受到威胁的独特潮间带生态系统,拥有复杂且在很大程度上尚未被探索的细菌群落,这些细菌对于沿海地区的营养循环和有毒污染物的降解至关重要。尽管其重要性不言而喻,但红海中沿海拉斯拉哈班-乌姆卢吉(Umluj)和阿尔蒙尼布拉-阿尔瓦吉(Al-Wajh)地区灰红树林()的细菌群落组成仍未得到充分研究。本研究旨在阐明沙特阿拉伯塔布克地区拉斯拉哈班-乌姆卢吉(Umluj)和阿尔蒙尼布拉-阿尔瓦吉(Al-Wajh)沿海地区与 相关的根际和非根际土壤的微生物组的结构和功能多样性。使用来自 Umluj 和 Al-Wajh 的根际和非根际土壤样品的宏基因组 DNA 进行了针对 16S rRNA 的扩增子测序。总共从所有样品中回收了 6876 个 OTU,其中 1857 个 OTU 在所有地点都很常见,而 Al-wajh 特有的 OTU 总数(3011 个 OTU)高于 Umluj 地点观察到的总数(1324 个 OTU)。基于多样性指数,两个地点的根际土壤样品的整体细菌多样性都相对较高。比较两个地点的根际土壤样品的多样性指数表明,与 Umluj 相比,Al-Wajh 的根际土壤样品的多样性更高。Al-Wajh 根际样本中最主要的属是 和 ,而 Umluj 同一栖息地则以 和 为主导。细菌功能潜力预测分析表明,来自两个地点的细菌具有几乎相似的功能基因模式,包括氨基酸和碳水化合物代谢、硫酸盐还原和 C-1 化合物代谢以及外来化合物生物降解。然而,两个地点的根际样本都含有更多参与 C-1 化合物利用和同化的基因。我们的研究结果表明,栖息在 根际的细菌群落与非根际土壤中的细菌群落有很大的不同,这表明 根可能在塑造这些细菌群落方面发挥了作用。此外,不仅是植被,地理位置似乎也会影响两个地点的整体细菌组成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be0/11493069/8dd7ace6844a/peerj-12-18282-g001.jpg

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