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用多组分重组蛋白刷解析神经丝尾部序列-磷酸化-结构关系。

Dissecting neurofilament tail sequence-phosphorylation-structure relationships with multicomponent reconstituted protein brushes.

机构信息

Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720.

Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.

出版信息

Proc Natl Acad Sci U S A. 2024 Dec 3;121(49):e2410109121. doi: 10.1073/pnas.2410109121. Epub 2024 Nov 27.

DOI:10.1073/pnas.2410109121
PMID:39602260
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11626179/
Abstract

Neurofilaments (NFs) are multisubunit, bottlebrush-shaped intermediate filaments abundant in the axonal cytoskeleton. Each NF subunit contains a long intrinsically disordered tail domain, which protrudes from the NF core to form a "brush" surrounding each NF. Precisely how the tails' variable charge patterns and repetitive phosphorylation sites mediate their conformation within the brush remains an open question in axonal biology. We address this problem by grafting recombinant NF tail protein constructs NF-Light, -Medium, and -Heavy (NFL, NFM, and NFH) to surfaces, yielding protein brushes of defined stoichiometry that can be phosphorylated in vitro. Atomic force microscopy measurements reveal that brush height depends on composition monotonically but not always linearly for binary NFL:NFM or NFL:NFH systems, and that NFM-based brushes are highly extended, while brushes incorporating the much larger NFH are surprisingly compact even after multisite phosphorylation. Complementary self-consistent field theory (SCFT) predicts multilayer brush morphologies for NFM and phosphorylated NFH brushes. Further experiments and SCFT analysis with designed mutants reveal that N-terminal negative charges in the NFH tail repel phosphorylated residues to generate the multilayer morphology, while the C-terminal charge-neutral region contributes to multilayer brush morphology but not total brush height. Charge-shuffled NFM variants show that charge segregation promotes brush collapse near physiological ionic strengths. Collectively, this study supports a role for NFM in establishing a dynamic range for NF brush conformation, lending insight into previous in vitro and in vivo findings. More broadly, this work establishes a platform for dissecting contributions of disordered protein sequence to conformation at interfaces.

摘要

神经丝(NFs)是多亚基、瓶刷状的中间丝,在轴突细胞骨架中丰富存在。每个 NF 亚基都含有一个长的固有无序尾部结构域,该结构域从 NF 核心突出,形成围绕每个 NF 的“刷子”。尾部的可变电荷模式和重复磷酸化位点如何精确调节其在刷子中的构象,仍然是轴突生物学中的一个悬而未决的问题。我们通过将重组 NF 尾部蛋白构建体 NF-Light、-Medium 和 -Heavy(NFL、NFM 和 NFH)接枝到表面上,得到具有明确定量组成的蛋白质刷子,这些刷子可以在体外进行磷酸化,从而解决了这个问题。原子力显微镜测量结果表明,刷子高度仅取决于组成,对于 NFL:NFM 或 NFL:NFH 二元系统,刷子高度不是单调增加,而是呈非线性增加,基于 NFM 的刷子高度延伸较大,而包含 NFH 的刷子则出人意料地紧凑,即使在多部位磷酸化后也是如此。互补的自洽场理论(SCFT)预测 NFM 和磷酸化 NFH 刷子的多层刷状形态。进一步的实验和带有设计突变体的 SCFT 分析表明,NFH 尾部的 N 端负电荷排斥磷酸化残基以产生多层形态,而 C 端电荷中性区域有助于多层刷状形态但不影响总刷高。电荷置换的 NFM 变体表明,电荷分离促进了在生理离子强度附近的刷子塌陷。总的来说,这项研究支持了 NFM 在建立 NF 刷子构象动态范围中的作用,为以前的体外和体内发现提供了线索。更广泛地说,这项工作为剖析无序蛋白质序列在界面处对构象的贡献提供了一个平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/405771e0c6f6/pnas.2410109121fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/15df39f8422f/pnas.2410109121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/083a28741712/pnas.2410109121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/2da5ca770ded/pnas.2410109121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/6fcde2396f35/pnas.2410109121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/9bfba84e3e44/pnas.2410109121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/405771e0c6f6/pnas.2410109121fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/15df39f8422f/pnas.2410109121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/083a28741712/pnas.2410109121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/2da5ca770ded/pnas.2410109121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/6fcde2396f35/pnas.2410109121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/9bfba84e3e44/pnas.2410109121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a72/11626179/405771e0c6f6/pnas.2410109121fig06.jpg

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