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重构 Real 接头域驱动组装因子从核糖体前体颗粒上的脱落。

Remodelling of Rea1 linker domain drives the removal of assembly factors from pre-ribosomal particles.

机构信息

Institut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.

Centre National de la Recherche Scientifique, Illkirch, France.

出版信息

Nat Commun. 2024 Nov 27;15(1):10309. doi: 10.1038/s41467-024-54698-w.

Abstract

The ribosome maturation factor Rea1 (or Midasin) catalyses the removal of assembly factors from large ribosomal subunit precursors and promotes their export from the nucleus to the cytosol. Rea1 consists of nearly 5000 amino-acid residues and belongs to the AAA+ protein family. It consists of a ring of six AAA+ domains from which the ≈1700 amino-acid residue linker emerges that is subdivided into stem, middle and top domains. A flexible and unstructured D/E rich region connects the linker top to a MIDAS (metal ion dependent adhesion site) domain, which is able to bind the assembly factor substrates. Despite its key importance for ribosome maturation, the mechanism driving assembly factor removal by Rea1 is still poorly understood. Here we demonstrate that the Rea1 linker is essential for assembly factor removal. It rotates and swings towards the AAA+ ring following a complex remodelling scheme involving nucleotide independent as well as nucleotide dependent steps. ATP-hydrolysis is required to engage the linker with the AAA+ ring and ultimately with the AAA+ ring docked MIDAS domain. The interaction between the linker top and the MIDAS domain allows direct force transmission for assembly factor removal.

摘要

核糖体成熟因子 Rea1(或 Midasin)催化从大核糖体亚基前体上去除组装因子,并促进它们从核输出到细胞质。Rea1 由近 5000 个氨基酸残基组成,属于 AAA+ 蛋白家族。它由六个 AAA+ 结构域组成,从这些结构域中伸出约 1700 个氨基酸残基的连接子,连接子进一步分为茎部、中部和顶部结构域。一个柔性无规的 D/E 富含区将连接子顶部与 MIDAS(金属离子依赖的黏附位点)结构域连接起来,该结构域能够结合组装因子底物。尽管 Rea1 对核糖体成熟至关重要,但驱动其去除组装因子的机制仍知之甚少。本文作者证明,Rea1 的连接子对于去除组装因子是必需的。它会沿着一个涉及非核苷酸依赖和核苷酸依赖步骤的复杂重排方案进行旋转和摆动,朝向 AAA+ 环。ATP 水解是将连接子与 AAA+ 环结合,并最终与与 AAA+ 环对接的 MIDAS 结构域结合所必需的。连接子顶部与 MIDAS 结构域之间的相互作用允许直接传递力以去除组装因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea9d/11603028/c56f11cdad7b/41467_2024_54698_Fig1_HTML.jpg

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