Biotechnology and Plant Improvement Laboratory, Centre of Biotechnology of Sfax (CBS), BP1177, 3018, Sfax, Tunisia.
University of Jandouba, Higher School of Agriculture of Kef (ESAK), Boulifa Campus, BP 7119, Kef, Tunisia.
Funct Integr Genomics. 2024 Nov 28;24(6):223. doi: 10.1007/s10142-024-01505-w.
APX proteins are HO-scavenging enzymes induced during oxidative stress. In the first part of this study, we provided an extensive knowledge on the APX family of Triticum durum, TdAPX and their related TdAPX-R, via the genome wide analysis. The outcomes showed that these proteins are clustered into four major subgroups. Furthermore, the exon-intron structure and the synteny analyses revealed that during evolution the genes TdAPX and TdAPX-R are relatively conserved. Besides, during their evolution, these genes underwent purifying selection pressure and were duplicated in segmental. In parallel, the analysis of the conserved motifs and the multiple sequence alignment demonstrated that the residues involved in the active sites, heme- and cations-binding are conserved only in TdAPX proteins. Following the RNA-seq data and the regulatory elements analyses, we focused in the second part of this study on the functional characterization of TdAPX7B-2. The qRT-PCR data showed the upregulation of TdAPX7B-2 essentially in leaves of durum wheat exposed to salt, cold, drought, metals and ABA treatments. The tolerance phenotype of the TdAPX7B-2-expressing Arabidopsis lines to salt, direct-induced oxidative stress and heavy metals was manifested by the development of root system, proline accumulation and induction of the antioxidant CAT, SOD and POD enzymes to maintain the non-toxic HO levels. Likewise, the response to salt stress and direct-oxidative stress of the transgenic lines was accompanied mainly by the induction of AtNCED3, AtRD29A/B and AtERD1.
APX 蛋白是氧化应激诱导的 HO 清除酶。在本研究的第一部分,我们通过全基因组分析,对硬粒小麦 Triticum durum 的 APX 家族及其相关的 TdAPX-R 进行了广泛的研究。结果表明,这些蛋白质聚集成四个主要亚群。此外,外显子-内含子结构和基因同线性分析表明,在进化过程中,TdAPX 和 TdAPX-R 基因相对保守。此外,在进化过程中,这些基因经历了纯化选择压力,并在片段上发生了复制。同时,保守基序分析和多序列比对表明,只有在 TdAPX 蛋白中,活性位点、血红素和阳离子结合的残基才是保守的。在 RNA-seq 数据和调控元件分析之后,我们在本研究的第二部分重点研究了 TdAPX7B-2 的功能特征。qRT-PCR 数据显示,盐、冷、干旱、金属和 ABA 处理后,硬粒小麦叶片中 TdAPX7B-2 的表达上调。在盐、直接诱导的氧化应激和重金属胁迫下,表达 TdAPX7B-2 的拟南芥系表现出根系发育、脯氨酸积累和抗氧化 CAT、SOD 和 POD 酶的诱导,以维持无毒 HO 水平。同样,转基因系对盐胁迫和直接氧化应激的反应主要伴随着 AtNCED3、AtRD29A/B 和 AtERD1 的诱导。