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通过基于原生荧光原位杂交的光学筛选鉴定ALT途径的新型调节剂。

Identification of Novel Modulators of the ALT Pathway Through a Native FISH-Based Optical Screen.

作者信息

Azeroglu Benura, Khurana Simran, Wang Shih-Chun, Tricola Gianna M, Sharma Shalu, Jubelin Camille, Cortolezzis Ylenia, Pegoraro Gianluca, Miller Kyle M, Stracker Travis H, Denchi Eros Lazzerini

机构信息

Laboratory of Genome Integrity, National Cancer Institute, National Institutes of Health, Bethesda, MD, United States.

Radiation Oncology Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

出版信息

bioRxiv. 2024 Nov 15:2024.11.15.623791. doi: 10.1101/2024.11.15.623791.

DOI:10.1101/2024.11.15.623791
PMID:39605432
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11601530/
Abstract

A significant portion of human cancers utilize a recombination-based pathway, Alternative Lengthening of Telomeres (ALT), to extend telomeres. To gain further insights into this pathway, we developed a high-throughput imaging-based screen named TAILS (Telomeric ALT Localization Screen), to identify genes that either promote or inhibit ALT activity. Screening over 1000 genes implicated in DNA transactions, TAILS revealed both well-established and novel ALT modulators. We have identified new factors that promote ALT, such as the nucleosome-remodeling factor CHD4 and the chromatin reader SGF29, as well as factors that suppress ALT, including the RNA helicases DDX39A/B, the replication factor TIMELESS, and components of the chromatin assembly factor CAF1. Our data indicate that defects in histone deposition significantly contribute to ALT-associated phenotypes. Based on these findings, we demonstrate that pharmacological treatments can be employed to either exacerbate or suppress ALT-associated phenotypes.

摘要

很大一部分人类癌症利用一种基于重组的途径——端粒替代延长(ALT)来延长端粒。为了更深入地了解这一途径,我们开发了一种基于高通量成像的筛选方法,名为TAILS(端粒ALT定位筛选),以鉴定促进或抑制ALT活性的基因。通过筛选1000多个与DNA交易相关的基因,TAILS揭示了既定的和新的ALT调节剂。我们已经鉴定出促进ALT的新因子,如核小体重塑因子CHD4和染色质阅读器SGF29,以及抑制ALT的因子,包括RNA解旋酶DDX39A/B、复制因子TIMELESS和染色质组装因子CAF1的组分。我们的数据表明,组蛋白沉积缺陷显著导致了ALT相关表型。基于这些发现,我们证明可以采用药物治疗来加重或抑制ALT相关表型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/9e10a18382c4/nihpp-2024.11.15.623791v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/b67a1759b509/nihpp-2024.11.15.623791v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/3dfa2335dab6/nihpp-2024.11.15.623791v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/95d5e6252409/nihpp-2024.11.15.623791v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/ab0a84c9d85b/nihpp-2024.11.15.623791v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/9e10a18382c4/nihpp-2024.11.15.623791v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/b67a1759b509/nihpp-2024.11.15.623791v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/3dfa2335dab6/nihpp-2024.11.15.623791v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/95d5e6252409/nihpp-2024.11.15.623791v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/ab0a84c9d85b/nihpp-2024.11.15.623791v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d54c/11601530/9e10a18382c4/nihpp-2024.11.15.623791v1-f0005.jpg

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本文引用的文献

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TRIM24 directs replicative stress responses to maintain ALT telomeres via chromatin signaling.TRIM24通过染色质信号传导引导复制应激反应以维持端粒延长替代途径(ALT)的端粒。
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A First-in-Class High-Throughput Screen to Discover Modulators of the Alternative Lengthening of Telomeres (ALT) Pathway.一种用于发现端粒替代延长(ALT)途径调节剂的首创高通量筛选方法。
ACS Pharmacol Transl Sci. 2024 Aug 13;7(9):2799-2819. doi: 10.1021/acsptsci.4c00251. eCollection 2024 Sep 13.
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Novel role for Ddx39 in differentiation and telomere length regulation of embryonic stem cells.
Ddx39 在胚胎干细胞分化和端粒长度调控中的新作用。
Cell Death Differ. 2024 Nov;31(11):1534-1544. doi: 10.1038/s41418-024-01354-x. Epub 2024 Aug 6.
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SUMO promotes DNA repair protein collaboration to support alternative telomere lengthening in the absence of PML.SUMO 促进 DNA 修复蛋白协作,以在没有 PML 的情况下支持端粒的替代性延长。
Genes Dev. 2024 Aug 20;38(13-14):614-630. doi: 10.1101/gad.351667.124.
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Histone deacetylase complexes: Structure, regulation and function.组蛋白去乙酰化酶复合物:结构、调控与功能。
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Parsing the roles of DExD-box proteins DDX39A and DDX39B in alternative RNA splicing.解析 DE 盒蛋白 DDX39A 和 DDX39B 在选择性 RNA 剪接中的作用。
Nucleic Acids Res. 2024 Aug 12;52(14):8534-8551. doi: 10.1093/nar/gkae431.
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The TIMELESS and PARP1 interaction suppresses replication-associated DNA gap accumulation.TIMeless 和 PARP1 的相互作用抑制与复制相关的 DNA 缺口积累。
Nucleic Acids Res. 2024 Jun 24;52(11):6424-6440. doi: 10.1093/nar/gkae445.
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BLM helicase unwinds lagging strand substrates to assemble the ALT telomere damage response.BLM 解旋酶解开滞后链底物,组装 ALT 端粒损伤反应。
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