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针对以下物种的参考基因组:一种生活在沙漠中的小型寄生蜂,带有相互竞争的性别比例扭曲因子。

A reference genome for : A tiny desert-dwelling parasitoid wasp with competing sex-ratio distorters.

作者信息

Culotta Jack, Lindsey Amelia Ri

机构信息

Department of Entomology, University of Minnesota, Saint Paul, MN, USA 51108.

出版信息

bioRxiv. 2024 Nov 23:2024.11.22.624848. doi: 10.1101/2024.11.22.624848.

Abstract

The tiny parasitoid wasp inhabits the Mojave Desert of the southwest United States. Populations of this tiny insect variably host up to two different sex-distorting genetic elements: (1) the endosymbiotic bacterium which induces the parthenogenetic reproduction of females, and (2) a B-chromosome, "Paternal Sex Ratio" (PSR), which converts would-be female offspring to PSR-transmitting males. We report here the genome of a -infected isofemale colony KSX58. Using Oxford Nanopore sequencing we produced a final genome assembly of 203 Mbp with 45x coverage, consisting of 213 contigs with an N50 of 1.9 Mbp. The assembly is quite complete, with 91.41% complete BUSCOs recovered: a very high score for Trichogrammatids that have been previously characterized for having high levels of core gene losses. We also report a complete mitochondrial genome for and an assembly of the associated , strain Tkk. We identified copies of the parthenogenesis-inducing genes and in a remnant prophage region of the Tkk genome. The assembly is the highest quality genome assembly for the genus to-date and will serve as a great resource for understanding the evolution of sex and selfish genetic elements.

摘要

这种微小的寄生蜂栖息在美国西南部的莫哈韦沙漠。这种微小昆虫的种群中不同程度地存在多达两种不同的性别扭曲遗传元件:(1)内共生细菌,它诱导雌性孤雌生殖;(2)一种B染色体,即“父本性别比”(PSR),它将原本会成为雌性的后代转化为传递PSR的雄性。我们在此报告一个感染了的同雌群体KSX58的基因组。使用牛津纳米孔测序技术,我们产生了一个最终的基因组组装序列,大小为203兆碱基对,覆盖度为45倍,由213个重叠群组成,N50为1.9兆碱基对。该组装相当完整,回收了91.41%的完整BUSCOs:对于此前已被鉴定为核心基因丢失水平较高的赤眼蜂科来说,这是一个非常高的分数。我们还报告了的完整线粒体基因组以及相关的菌株Tkk的组装序列。我们在Tkk基因组的一个残留原噬菌体区域中鉴定出了诱导孤雌生殖的基因和的拷贝。该组装序列是迄今为止该属中质量最高的基因组组装序列,将成为理解性别和自私遗传元件进化的重要资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3019/11601539/dc9e57a1a968/nihpp-2024.11.22.624848v2-f0001.jpg

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