Glendening A M, Stephens Cole, Vuruputoor Vidya S, Stern David L, Hogenhout Saskia A, Mathers Thomas C, Chaganti Tesko, Pauloski Nicole, Cernak Tim A, Wegrzyn Jill L, Fetter Karl C
Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA 06269.
Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA 48109.
bioRxiv. 2024 Nov 26:2024.11.21.624573. doi: 10.1101/2024.11.21.624573.
Two invasive hemipteran adelgids cause widespread damage to North American conifers. (the hemlock woolly adelgid) has decimated and (the Eastern and Carolina hemlocks, respectively). was introduced from East Asia and reproduces parthenogenetically in North America, where it can kill trees rapidly. introduced from Europe, makes "pineapple" galls on several North American spruce species, and weakens trees, increasing their susceptibility to other stresses. Broad-spectrum insecticides that are often used to control adelgid populations can have off-target impacts on beneficial insects and the development of more selective chemical treatments could improve control methods and minimize ecological damage. Whole genome sequencing was performed on both species to aid in development of targeted pest control solutions and improve species conservation. The assembled and genomes are 220.75 Mbp and 253.16 Mbp, respectively, each consisting of nine chromosomes and both genomes are over 96% complete based on BUSCO assessment. Genome annotation identified 11,424 and 14,118 protein-coding genes in , respectively. Comparative analysis across 29 Hemipteran species and 14 arthropod outgroups identified 31,666 putative gene families. Gene family expansions in included ABC transporters and carboxypeptidases involved in carbohydrate metabolism, while both species showed contractions in core histone families and oxidoreductase pathways. Gene family expansions in highlighted families associated with the regulation of cell differentiation and development (, SMN; JHAMT) as well as those that may be involved in the suppression of plant immunity (, CLIPD; , ERAP1). Among the analyzed gene families, Nicotinic acetylcholine receptors (nAChRs) maintained consistent copy numbers and structural features across species, a finding particularly relevant given their role as targets for current forestry management insecticides. Detailed phylogenetic analysis of nAChR subunits across adelgids and other ecologically important insects revealed remarkable conservation in both sequence composition and predicted structural features, providing crucial insights for the development of more selective pest control strategies.
两种入侵性半翅目球蚜对北美针叶树造成了广泛破坏。铁杉球蚜(the hemlock woolly adelgid)已使铁杉(the Eastern and Carolina hemlocks)数量锐减。铁杉球蚜从东亚引入,在北美孤雌生殖,能迅速杀死树木。云杉球蚜从欧洲引入,在几种北美云杉上形成“菠萝”瘿瘤,使树木衰弱,增加其对其他胁迫的易感性。常用于控制球蚜种群的广谱杀虫剂可能对有益昆虫产生非靶标影响,开发更具选择性的化学处理方法可改善防治手段并减少生态破坏。对这两个物种都进行了全基因组测序,以协助开发针对性的害虫防治解决方案并改善物种保护。组装后的铁杉球蚜和云杉球蚜基因组分别为220.75 Mbp和253.16 Mbp,均由9条染色体组成,基于BUSCO评估,两个基因组的完整性均超过96%。基因组注释分别在铁杉球蚜和云杉球蚜中鉴定出11424个和14118个蛋白质编码基因。对29种半翅目物种和14个节肢动物外类群的比较分析确定了31666个推定基因家族。铁杉球蚜中的基因家族扩张包括参与碳水化合物代谢的ABC转运蛋白和羧肽酶,而两个物种在核心组蛋白家族和氧化还原酶途径中都出现了收缩。云杉球蚜中的基因家族扩张突出了与细胞分化和发育调控相关的家族(如,SMN;JHAMT)以及可能参与抑制植物免疫的家族(如,CLIPD;ERAP1)。在所分析的基因家族中,烟碱型乙酰胆碱受体(nAChRs)在物种间保持一致的拷贝数和结构特征,鉴于其作为当前林业管理杀虫剂靶标的作用,这一发现尤为重要。对球蚜和其他具有生态重要性的昆虫的nAChR亚基进行的详细系统发育分析揭示了序列组成和预测结构特征方面的显著保守性,为开发更具选择性的害虫防治策略提供了关键见解。