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鉴定导致母源H19印记控制区(ICR)高甲基化并伴有贝克威思-维德曼综合征样过度生长的相关突变序列。

Identification of responsible sequences which mutations cause maternal H19-ICR hypermethylation with Beckwith-Wiedemann syndrome-like overgrowth.

作者信息

Hara Satoshi, Matsuhisa Fumikazu, Kitajima Shuji, Yatsuki Hitomi, Kubiura-Ichimaru Musashi, Higashimoto Ken, Soejima Hidenobu

机构信息

Division of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan.

Division of Biological Resources and Development, Analytical Research Center for Experimental Sciences, Saga University, Saga, 849-8501, Japan.

出版信息

Commun Biol. 2024 Dec 2;7(1):1605. doi: 10.1038/s42003-024-07323-x.

DOI:10.1038/s42003-024-07323-x
PMID:39623082
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11612015/
Abstract

Beckwith-Wiedemann syndrome (BWS) is caused by a gain of methylation (GOM) at the imprinting control region within the Igf2-H19 domain on the maternal allele (H19-ICR GOM). Mutations in the binding sites of several transcription factors are involved in H19-ICR GOM and BWS. However, the responsible sequence(s) for H19-ICR GOM with BWS-like overgrowth has not been identified in mice. Here, we report that a mutation in the SOX-OCT binding site (SOBS) causes partial H19-ICR GOM, which does not extend beyond CTCF binding site 3 (CTS3). Moreover, simultaneously mutating both SOBS and CTS3 causes complete GOM of the entire H19-ICR, leading to the misexpression of the imprinted genes, and frequent BWS-like overgrowth. In addition, CTS3 is critical for CTCF/cohesin-mediated chromatin conformation. These results indicate that SOBS and CTS3 are the sequences in which mutations cause H19-ICR GOM leading to BWS-like overgrowth and are essential for maintaining the unmethylated state of maternal H19-ICR.

摘要

贝克威思-维德曼综合征(BWS)是由母源等位基因上Igf2-H19结构域内印记控制区的甲基化增加(GOM)(H19-ICR GOM)引起的。几种转录因子结合位点的突变与H19-ICR GOM和BWS有关。然而,在小鼠中尚未鉴定出与BWS样过度生长相关的H19-ICR GOM的责任序列。在此,我们报告SOX-OCT结合位点(SOBS)的突变会导致部分H19-ICR GOM,其不会延伸超过CTCF结合位点3(CTS3)。此外,同时突变SOBS和CTS3会导致整个H19-ICR完全GOM,导致印记基因的错误表达以及频繁出现BWS样过度生长。另外,CTS3对于CTCF/黏连蛋白介导的染色质构象至关重要。这些结果表明,SOBS和CTS3是其中的突变会导致H19-ICR GOM从而导致BWS样过度生长的序列,并且对于维持母源H19-ICR的未甲基化状态至关重要。

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Nat Genet. 2023 Jan;55(1):130-143. doi: 10.1038/s41588-022-01258-x. Epub 2022 Dec 20.
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The number of the CTCF binding sites of the H19/IGF2:IG-DMR correlates with DNA methylation and expression imprinting in a humanized mouse model.
H19/IGF2:IG-DMR 的 CTCF 结合位点数量与 DNA 甲基化和印迹表达在人源化小鼠模型中相关。
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Nat Commun. 2021 Jun 7;12(1):3337. doi: 10.1038/s41467-021-23630-x.
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Humanization of a tandem repeat in IG-DMR causes stochastic restoration of paternal imprinting at mouse Dlk1-Dio3 domain.IG-DMR 串联重复序列的人性化导致小鼠 Dlk1-Dio3 区域印迹的随机恢复。
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