Tuo Junkai, Nawab Said, Ma Xiaoyan, Huo Yi-Xin
Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, China.
Beijing Institute of Technology (Tangshan) Translational Research Center, Tangshan Port Economic Development Zone, Tangshan 063611, China.
Eng Microbiol. 2022 Dec 22;3(1):100066. doi: 10.1016/j.engmic.2022.100066. eCollection 2023 Mar.
Microbial fermentation has contributed to 80% of global amino acid production. The key to microbial fermentation is to obtain fermentation strains with high performance to produce target amino acids with a high yield. These strains are primarily derived from screening enormous mutant libraries. Therefore, a high-throughput, rapid, accurate, and universal screening strategy for amino acid overproducers has become a guarantee for obtaining optional amino acid overproducers. In recent years, the rapid development of various novel screening strategies has been witnessed. However, proper analysis and discussion of these innovative technologies are lacking. Here we systematically reviewed recent advances in screening strategies: the auxotrophic-based strategy, the biosensor-based strategy, and the latest translation-based screening strategy. The design principle, application scope, working efficiency, screening accuracy, and universality of these strategies were discussed in detail. The potential for screening nonstandard amino acid overproducers was also analyzed. Guidance for the improvement of future screening strategies is provided in this review, which could expedite the reconstruction of amino acid overproducers and help promote the fermentation industry to reduce cost, increase yield, and improve quality.
微生物发酵已占全球氨基酸产量的80%。微生物发酵的关键在于获得具有高性能的发酵菌株,以高产率生产目标氨基酸。这些菌株主要来源于筛选大量的突变体文库。因此,一种用于氨基酸高产菌株的高通量、快速、准确且通用的筛选策略已成为获得理想氨基酸高产菌株的保障。近年来,见证了各种新型筛选策略的快速发展。然而,缺乏对这些创新技术的恰当分析和讨论。在此,我们系统地综述了筛选策略的最新进展:基于营养缺陷型的策略、基于生物传感器的策略以及最新的基于翻译的筛选策略。详细讨论了这些策略的设计原理、应用范围、工作效率、筛选准确性和通用性。还分析了筛选非标准氨基酸高产菌株的潜力。本综述为未来筛选策略的改进提供了指导,这可以加快氨基酸高产菌株的改造,并有助于推动发酵行业降低成本、提高产量和改善质量。