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从唐库班珀拉胡火山分离嗜热细菌及其作为抗生物膜候选物的新颖性

Isolation of Thermophilic Bacteria From Mount Tangkuban Perahu and the Novelty as a Candidate for Anti-Biofilm.

作者信息

Rachmawati Emma, Asarina Shinta, Bagus Kennardi Gabriel, Tabina Tawangalun Akeyla, Arumimaniyah Candra, Indah Sari Kartika, Tjaturina Pramesti Hening, Safitri Ratu, Maskoen Ani Melani

机构信息

Department of Oral Biology, Faculty of Dentistry, Universitas Padjadjaran, Bandung, Indonesia.

Microbiology Laboratory Assistant, Faculty of Medicine, Universitas Padjadjaran, Bandung, Indonesia.

出版信息

Int J Dent. 2024 Nov 25;2024:4285984. doi: 10.1155/ijod/4285984. eCollection 2024.

Abstract

Thermophilic bacteria living in extreme areas with high temperatures are capable of producing secondary metabolites, such as antimicrobial peptides (AMPs). AMPs are stable at high temperatures and show good antibacterial activity. Therefore, this study aimed to identify thermophilic bacteria from the crater of Mount Tangkuban Perahu around West Java and assess antibacterial effectiveness of AMPs against , which contribute to oral biofilm formation. The isolate obtained was identified using 16S ribosomal ribonucleic acid (rRNA) gene sequencing, and the supernatant of the isolate was tested against American Type Culture Collection (ATCC) 25175 using the disc assay method. To determine AMPs-coding genes, its genome was uploaded to antibiotic and secondary metabolite analysis shell (antiSMASH) 5.0.0 platform and biofilm inhibition was tested using the microtiter plate technique (with a 96-well bottom). Subsequently, the results were assessed using a microplate reader operating at 595 nm wavelength. The isolate was identified as , with antibacterial activity against , and produced an inhibition zone of 8.40 mm at an optimum pH of 8. The output of AMPs-coding gene showed that AMPs of the isolate were a member of the lanthipeptide class I, or bacteriocin-I group. AMPs of suppressed the growth of biofilm at a supernatant concentration of 5%, with the lowest optical density (OD) value of 0.061 and the highest percentage of biofilm growth inhibition at 28.24%. Based on the results, derived from the crater of Mount Tangkuban Perahu showed potent antibacterial properties against , making it a promising novel anti-biofilm candidate.

摘要

生活在高温极端环境中的嗜热细菌能够产生次级代谢产物,如抗菌肽(AMPs)。AMPs在高温下稳定,并表现出良好的抗菌活性。因此,本研究旨在从西爪哇附近的唐库班珀拉胡火山口识别嗜热细菌,并评估AMPs对导致口腔生物膜形成的细菌的抗菌效果。使用16S核糖体核糖核酸(rRNA)基因测序对获得的分离株进行鉴定,并使用纸片扩散法将分离株的上清液针对美国典型培养物保藏中心(ATCC)25175进行测试。为了确定AMPs编码基因,将其基因组上传到抗生素和次级代谢产物分析软件(antiSMASH)5.0.0平台,并使用微量滴定板技术(底部为96孔)测试生物膜抑制情况。随后,使用在595 nm波长下运行的酶标仪评估结果。该分离株被鉴定为[具体菌种名称未给出],对[具体菌种名称未给出]具有抗菌活性,在最佳pH为8时产生的抑菌圈为8.40 mm。AMPs编码基因的输出结果表明,该分离株的AMPs属于I类羊毛硫肽或细菌素-I组。该分离株的AMPs在上清液浓度为5%时抑制了[具体菌种名称未给出]生物膜的生长,最低光密度(OD)值为0.061,生物膜生长抑制的最高百分比为28.24%。基于这些结果,从唐库班珀拉胡火山口分离得到的[具体菌种名称未给出]对[具体菌种名称未给出]显示出强大的抗菌特性,使其成为一种有前途的新型抗生物膜候选物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4437/11614514/40e500d02111/IJD2024-4285984.001.jpg

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