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分子对接以及对来自……的生物活性化合物的药代动力学、毒理学特征和差异基因表达的分析。

Molecular docking and analysis of the pharmacokinetics, toxicological profile and differential gene expression of bioactive compounds from .

作者信息

Araujo Natália Gonçalves Ribeiro, da Silva Junior Francisco Carlos, Santos Lizandra Vitória de Souza, Batistuzzo de Medeiros Silvia Regina, Felzenszwalb Israel, Araújo-Lima Carlos Fernando

机构信息

Laboratory of Environmental Mutagenesis, Department of Biophysics and Biometry, IBRAG/UERJ (University of the State of Rio de Janeiro), 87 - Fundos, 4th floor, Vila Isabel, Rio de Janeiro, RJ 20551-030, Brazil.

Toxicology Center, University of Saskatchewan, 44 Campus Dr, Saskatchewan S7N 5B3, Canada.

出版信息

Toxicol Rep. 2024 Nov 15;13:101810. doi: 10.1016/j.toxrep.2024.101810. eCollection 2024 Dec.

Abstract

The genus , from the family, is widely used for its therapeutic properties in the treatment of tuberculosis, abscesses, urinary infection, and colds. , one of the species of this genus, is endemic in Brazil and largely used in herbal medicine. Thus, it is of great interest to recognize its composition, the properties of the molecules found in it. This study aimed to perform the analysis of the main compounds from , on the platforms pKCSM, SwissADME, LAZAR, CLC-pred, ToxTree, DIGEPred, STRING, and Cytoscape. Further than this, the molecular docking was performed. The compounds present in the aqueous extract of were identified by UHPLC-MS/MS, finding Arbutin, Caffeic acid 4-O-glucoside, and Dihydroformononetin as the three most abundant molecules. The evaluation of the gastrointestinal absorption of Dihydroformononetin is given as high, also managing to cross the blood-brain barrier, while Arbutin can only be absorbed by the gastrointestinal tract and Caffeic acid 4-O-glucoside had very low absorption. Further analysis showed that Arbutin and Dihydroformononetin are possible leading molecules for drug synthesis, according to the prediction. Toxicological aspects were analysed, and no adverse effects were noted, but there were divergences in the mutagenic prediction of Arbutin and Dihydroformononetin, having different results in the used platforms, demonstrating that a cautious analysis and data insertion is needed in these tools to optimize them. The analysis of the differentially expressed genes predicted that the compounds can regulate several genes, including some genes associated with carcinogenesis and inflammation. The Molecular docking analysis showed high binding affinities of the molecules with different proteins. Therefore, demonstrates the potential to be used as a phytotherapeutic. The same was given through the analysis of the three compounds found in the orchid, that show good individual potential.

摘要

该属植物来自[具体科名]科,因其在治疗结核病、脓肿、泌尿系统感染和感冒方面的治疗特性而被广泛使用。[属名]属的一个物种[种名]在巴西是地方性植物,在草药中大量使用。因此,了解其成分以及其中发现的分子特性具有重要意义。本研究旨在在pKCSM、SwissADME、LAZAR、CLC-pred、ToxTree、DIGEPred、STRING和Cytoscape平台上对[种名]的主要化合物进行[具体分析名称]分析。除此之外,还进行了分子对接。通过UHPLC-MS/MS鉴定了[种名]水提取物中存在的化合物,发现熊果苷、咖啡酸4-O-葡萄糖苷和二氢大豆素是三种含量最高的分子。二氢大豆素的胃肠道吸收评估结果为高,还能够穿过血脑屏障,而熊果苷只能被胃肠道吸收,咖啡酸4-O-葡萄糖苷的吸收非常低。进一步分析表明,根据预测,熊果苷和二氢大豆素可能是药物合成的先导分子。分析了毒理学方面,未发现不良反应,但在熊果苷和二氢大豆素的致突变预测方面存在差异,在使用的平台上有不同结果,表明在这些工具中需要进行谨慎的分析和数据插入以优化它们。对差异表达基因的分析预测这些化合物可以调节多个基因,包括一些与致癌作用和炎症相关的基因。分子对接分析表明这些分子与不同蛋白质具有高结合亲和力。因此,[种名]显示出作为植物疗法使用的潜力。通过对兰花中发现的三种化合物的[具体分析名称]分析也得出了相同结论,这三种化合物各自显示出良好的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8ac/11612344/fab1293395fe/ga1.jpg

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