Sun Yaping, Ko Danny Hsu, Gao Jie, Fu Kang, Mao Yuanchen, He Yun, Tian Hui
Research Center of Molecular Diagnostics and Sequencing, Research Institute of Tsinghua University in Shenzhen, Shenzhen, China.
Front Microbiol. 2024 Nov 20;15:1501020. doi: 10.3389/fmicb.2024.1501020. eCollection 2024.
The properties of DNA polymerases isolated from thermophilic and mesophilic microorganisms, such as the thermophilic (Bst) and mesophilic (Phi29), have been widely researched. However, DNA polymerases in psychrophilic microorganisms remain poorly understood. In this study, we present for the first time the expression and functional characterization of DNA polymerases PWT-WT and FWT-WT from sp. BL-248-WT-3 and FJAT-21963. Enzymatic activity assays revealed that FWT-WT possessed strand displacement but lacked exonuclease activity and high ionic strength tolerance, whereas PWT-WT lacked all these properties. Further protein engineering and biochemical analysis identified D423 and S490 as critical mutation sites for improving strand displacement and tolerance to high ionic strength, specifically in the presence of 0-0.3 M potassium chloride (KCl), sodium chloride (NaCl), and potassium acetate (KAc). Three-dimensional structural analysis demonstrated that the size and the electric charge of the single-stranded DNA (ssDNA) encapsulation entrance were pivotal factors in the binding of the ssDNA template.
从嗜热和嗜温微生物中分离出的DNA聚合酶的特性,如嗜热的(Bst)和嗜温的(Phi29),已经得到了广泛研究。然而,嗜冷微生物中的DNA聚合酶仍知之甚少。在本研究中,我们首次展示了来自sp. BL - 248 - WT - 3和FJAT - 21963的DNA聚合酶PWT - WT和FWT - WT的表达及功能特性。酶活性测定表明,FWT - WT具有链置换活性,但缺乏核酸外切酶活性和高离子强度耐受性,而PWT - WT则缺乏所有这些特性。进一步的蛋白质工程和生化分析确定,D423和S490是提高链置换和高离子强度耐受性的关键突变位点,特别是在存在0 - 0.3 M氯化钾(KCl)、氯化钠(NaCl)和醋酸钾(KAc)的情况下。三维结构分析表明,单链DNA(ssDNA)包封入口的大小和电荷是ssDNA模板结合的关键因素。