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通过经典分子动力学研究NO-MIL-53(Al)中的长程和耦合转子动力学

Long-Range and Coupled Rotor Dynamics in NO-MIL-53(Al) by Classical Molecular Dynamics.

作者信息

Mula Srinidhi, Bierkens Joris, Vanduyfhuys Louis, van der Veen Monique A

机构信息

Department of Chemical Engineering, Delft University of Technology, 2629 HZ Delft, The Netherlands.

Delft Institute of Applied Mathematics, Delft University of Technology, 2628 CD Delft, The Netherlands.

出版信息

J Phys Chem C Nanomater Interfaces. 2024 Nov 12;128(47):20264-20274. doi: 10.1021/acs.jpcc.4c05851. eCollection 2024 Nov 28.

Abstract

By tuning the steric environment and free pore space in metal-organic frameworks, a large variety of rotor dynamics of the organic linkers can appear. Nitrofunctionalized MIL-53 is a terephthalate-linker-based MOF that shows coupled rotor dynamics between the neighboring linkers along the pore direction. Here, we use classical molecular dynamics up to 6 × 2 × 2 supercells to investigate the range of the correlated linker dynamics. Interestingly, we observe an PNPNPNPN... conformational arrangement (P = nearly planar and N = nonplanar) for the conformations of the linkers in a row along the pore direction in the MOF. We identified correlated linker dynamics emerging among the direct and next nearest neighboring linkers along the pore. Due to 180° rotational flips of the planar linkers along the pore, (1) a change in the width of librations in their direct neighbors (PN) is observed; (2) intriguingly, their next nearest planar neighbors (PP) rotate between 0° and ±180° to reattain aligned (0°, 0°) or (±180°, ±180°) conformations. The presence of correlated dynamics in such linkers over long-length scales occurring at nanoseconds time scales is desirable for applications like ferroelectric switching or diffusion control via geared linker rotation, and this work provides insight into the design for such applications.

摘要

通过调节金属有机框架中的空间环境和自由孔隙空间,可以出现各种各样的有机连接体转子动力学。硝基官能化的MIL-53是一种基于对苯二甲酸连接体的金属有机框架,它在沿孔隙方向的相邻连接体之间表现出耦合转子动力学。在此,我们使用高达6×2×2超晶胞的经典分子动力学来研究相关连接体动力学的范围。有趣的是,我们在金属有机框架中沿孔隙方向的一排连接体构象中观察到一种PNPNPNPN...构象排列(P = 近乎平面,N = 非平面)。我们确定了沿孔隙方向在直接相邻和次近邻连接体之间出现的相关连接体动力学。由于平面连接体沿孔隙的180°旋转翻转,(1)观察到其直接相邻体(PN)的摆动宽度发生变化;(2)有趣的是,其次近平面相邻体(PP)在0°和±180°之间旋转,以重新达到对齐的(0°, 0°)或(±180°, ±180°)构象。在纳秒时间尺度上在长长度尺度上此类连接体中存在相关动力学,对于诸如铁电开关或通过齿轮状连接体旋转进行扩散控制等应用是可取的,并且这项工作为这类应用的设计提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cc/11613561/c6597b5024f8/jp4c05851_0001.jpg

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