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难以捉摸的海洋疣微菌门微生物:新属Seribacter和Chordibacter中季节性丰富的成员专门降解硫酸化聚糖。

Elusive marine Verrucomicrobiota: Seasonally abundant members of the novel genera Seribacter and Chordibacter specialize in degrading sulfated glycans.

作者信息

Wilkie Isabella, Orellana Luis H

机构信息

Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Bremen 28359, Germany.

Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Bremen 28359, Germany.

出版信息

Syst Appl Microbiol. 2025 Jan;48(1):126562. doi: 10.1016/j.syapm.2024.126562. Epub 2024 Nov 19.

Abstract

Members of the phylum Verrucomicrobiota play a significant role in various ecosystems, yet they are underrepresented in databases due to their comparatively lower abundance and isolation challenges. The use of cultivation-independent approaches has unveiled their hidden diversity and specialized metabolic capabilities, yet many of these populations remain uncharacterized. In this study, we focus on members of the family MB11C04 associated with North Sea spring blooms. Our analyses revealed recurrent MB11C04 populations with increased abundance in the late stages of spring blooms over ten-years. By examining their genomic content, we identified specialized genetic features for the degradation of complex polysaccharides, particularly sulfated and fucose-rich compounds, suggesting their role in utilizing organic matter during the collapse of the bloom. Furthermore, we describe two novel genera each with a novel species (Seribacter gen. Nov., Chordibacter gen. Nov.) in accordance with the SeqCode initiative based on high quality metagenome-assembled genomes. We also propose a new name for the family MB11C04, Seribacteraceae. Our findings shed light on the ecological significance and metabolic potential of Verrucomicrobiota populations in spring bloom events.

摘要

疣微菌门的成员在各种生态系统中发挥着重要作用,但由于其丰度相对较低以及分离方面的挑战,它们在数据库中的代表性不足。非培养方法的使用揭示了它们隐藏的多样性和特殊的代谢能力,但许多这类菌群仍未得到表征。在本研究中,我们聚焦于与北海春季水华相关的MB11C04科的成员。我们的分析揭示,在十年间的春季水华后期,MB11C04菌群反复出现且丰度增加。通过检查它们的基因组内容,我们确定了用于降解复杂多糖(特别是富含硫酸化和岩藻糖的化合物)的特殊遗传特征,这表明它们在水华消退期间利用有机物方面发挥了作用。此外,根据SeqCode倡议,基于高质量的宏基因组组装基因组,我们描述了两个新属,每个属都有一个新物种(新属Seribacter、新属Chordibacter)。我们还为MB11C04科提出了一个新名称——Seribacteraceae。我们的研究结果揭示了疣微菌门菌群在春季水华事件中的生态意义和代谢潜力。

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