Li Hojun, Côté Parker, Kuoch Michael, Ezike Jideofor, Frenis Katie, Afanassiev Anton, Greenstreet Laura, Tanaka-Yano Mayuri, Tarantino Giuseppe, Zhang Stephen, Whangbo Jennifer, Butty Vincent L, Moiso Enrico, Falchetti Marcelo, Lu Kate, Connelly Guinevere G, Morris Vivian, Wang Dahai, Chen Antonia F, Bianchi Giada, Daley George Q, Garg Salil, Liu David, Chou Stella T, Regev Aviv, Lummertz da Rocha Edroaldo, Schiebinger Geoffrey, Rowe R Grant
Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Division of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.
Nat Methods. 2025 Feb;22(2):422-434. doi: 10.1038/s41592-024-02495-0. Epub 2024 Dec 5.
Over a lifetime, hematopoietic stem cells (HSCs) adjust their lineage output to support age-aligned physiology. In model organisms, stereotypic waves of hematopoiesis have been observed corresponding to defined age-biased HSC hallmarks. However, how the properties of hematopoietic stem and progenitor cells change over the human lifespan remains unclear. To address this gap, we profiled individual transcriptome states of human hematopoietic stem and progenitor cells spanning gestation, maturation and aging. Here we define the gene expression networks dictating age-specific differentiation of HSCs and the dynamics of fate decisions and lineage priming throughout life. We additionally identifiy and functionally validate a fetal-specific HSC state with robust engraftment and multilineage capacity. Furthermore, we observe that classification of acute myeloid leukemia against defined transcriptional age states demonstrates that utilization of early life transcriptional programs associates with poor prognosis. Overall, we provide a disease-relevant framework for heterochronic orientation of stem cell ontogeny along the real time axis of the human lifespan.
在整个生命周期中,造血干细胞(HSC)会调整其谱系输出,以支持与年龄相适应的生理功能。在模式生物中,已观察到与特定年龄偏向的造血干细胞特征相对应的刻板造血波。然而,造血干细胞和祖细胞的特性在人类生命周期中如何变化仍不清楚。为了填补这一空白,我们分析了从妊娠、成熟到衰老的人类造血干细胞和祖细胞的个体转录组状态。在这里,我们定义了决定造血干细胞年龄特异性分化的基因表达网络,以及整个生命过程中命运决定和谱系启动的动态变化。我们还鉴定并在功能上验证了一种具有强大植入能力和多谱系分化能力的胎儿特异性造血干细胞状态。此外,我们观察到,针对定义的转录年龄状态对急性髓系白血病进行分类表明,利用早期生命转录程序与不良预后相关。总体而言,我们为沿着人类生命周期的实时轴对干细胞个体发生进行异时定向提供了一个与疾病相关的框架。