Nee Shelly Aggarwal Shelly Singhal, Kaur Divpreet, Saluja Daman, Srivastava Kamna
Dr. B.R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi, India.
Mol Divers. 2024 Dec 8. doi: 10.1007/s11030-024-11063-9.
The PCSK9 protein binds to LDL receptors (LDLR), leading to their degradation and reduced expression on cell surfaces. This decreased the clearance of LDL cholesterol from the bloodstream, thereby increasing the risk of coronary artery diseases. Targeting the PCSK9-LDL receptor interaction is crucial for regulating LDL cholesterol levels and preventing cardiovascular disease. This study aims to screen low molecular weight inhibitors to disrupt the PCSK9-LDLR interaction. We employed a comprehensive approach combining high-throughput virtual screening of DrugBank database, followed by molecular docking studies using CDOCKER and flexible docking methods. The top four lead compounds were further validated through molecular dynamics (MD) simulations and binding free energy calculations using MM-PBSA. Finally, the in vitro assay confirmed that Benazepril and Quinapril exhibited the highest potency as PCSK9-LDLR disruptors among the top candidates. These lead compounds have the potential to be repurposed as lipid-lowering agents for the treatment of cardiovascular diseases, offering a promising therapeutic strategy.
前蛋白转化酶枯草溶菌素9(PCSK9)蛋白与低密度脂蛋白受体(LDLR)结合,导致其降解并降低细胞表面的表达。这降低了血液中低密度脂蛋白胆固醇的清除率,从而增加了冠状动脉疾病的风险。靶向PCSK9与低密度脂蛋白受体的相互作用对于调节低密度脂蛋白胆固醇水平和预防心血管疾病至关重要。本研究旨在筛选低分子量抑制剂以破坏PCSK9与LDLR的相互作用。我们采用了一种综合方法,结合对DrugBank数据库进行高通量虚拟筛选,随后使用CDOCKER和柔性对接方法进行分子对接研究。通过分子动力学(MD)模拟和使用MM-PBSA的结合自由能计算,对排名前四的先导化合物进行了进一步验证。最后,体外试验证实,在顶级候选物中,贝那普利和喹那普利作为PCSK9-LDLR破坏剂表现出最高的效力。这些先导化合物有可能被重新用作治疗心血管疾病的降脂药物,提供了一种有前景的治疗策略。