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一个供体登记库:海草草甸的基因组分析确定了适应未来的基因型。

A Donor Registry: Genomic Analyses of Seagrass Meadows Identifies Adaptive Genotypes for Future-Proofing.

作者信息

Nimbs Matt J, Glasby Tim M, Sinclair Elizabeth A, Swadling Daniel, Davis Tom R, Coleman Melinda A

机构信息

Fisheries Research, New South Wales Department of Primary Industries and Regional Development National Marine Science Centre Coffs Harbour New South Wales Australia.

National Marine Science Centre Southern Cross University Coffs Harbour New South Wales Australia.

出版信息

Ecol Evol. 2024 Dec 6;14(12):e70667. doi: 10.1002/ece3.70667. eCollection 2024 Dec.

Abstract

Globally, anthropogenic climate change has caused declines of seagrass ecosystems necessitating proactive restoration approaches that would ideally anticipate future climate scenarios, such as marine warming. In eastern Australia, estuaries with meadows of the endangered seagrass s have warmed and acidified over the past decade, and seagrass communities have declined in some estuaries. Securing these valuable habitats will require proactive conservation and restoration efforts that could be augmented with restoration focussed on boosting resilience to future climate. Understanding patterns of selection and where seagrass meadows are adapted to particular environmental conditions is key for identifying optimal donor material for restoration. We used single nucleotide polymorphisms and genotype by environment analyses to identify candidate loci under putative selection to environmental stressors and assess genomic variation and allelic turnover along stressor gradients. The most important physicochemical variables driving selection were associated with temperature, water turbidity, and pH. We developed a preliminary 'donor registry' of pre-adapted genotypes by mapping the distribution of alleles to visualise allelic composition of each sampled seagrass meadow. The registry could be used as a first step to select source material for future-proofing restoration projects. A next step is to establish manipulative experiments that will be required to test whether pre-adapted genotypes confer increased resistance to multiple environmental stressors.

摘要

在全球范围内,人为气候变化已导致海草生态系统衰退,因此需要采取积极的恢复方法,理想情况下应能预测未来的气候情景,如海洋变暖。在澳大利亚东部,过去十年中,拥有濒危海草草甸的河口已经变暖并酸化,一些河口的海草群落已经减少。保护这些宝贵的栖息地需要积极的保护和恢复努力,通过以增强对未来气候的适应力为重点的恢复措施可以加强这些努力。了解选择模式以及海草草甸在何处适应特定环境条件,对于确定恢复的最佳供体材料至关重要。我们使用单核苷酸多态性和基因型与环境分析来识别假定受环境压力源选择的候选基因座,并评估沿压力源梯度的基因组变异和等位基因周转。驱动选择的最重要物理化学变量与温度、水体浊度和pH值有关。我们通过绘制等位基因分布来可视化每个采样海草草甸的等位基因组成,从而建立了一个预先适应基因型的初步“供体登记册”。该登记册可作为为未来恢复项目选择源材料的第一步。下一步是建立操纵实验,以测试预先适应的基因型是否能增强对多种环境压力源的抵抗力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b17/11622155/901e143feee5/ECE3-14-e70667-g002.jpg

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