McCormick James W, Dinan Jerry C, Russo Marielle Ax, Reynolds Kimberly A
Green Center for Systems Biology - Lyda Hill Department of Bioinformatics, The University of Texas Southwestern Medical Center, Dallas, TX 75230.
Department of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75230.
bioRxiv. 2024 Nov 28:2024.11.26.625553. doi: 10.1101/2024.11.26.625553.
The LOV2 domain is commonly harnessed as a source of light-based regulation in engineered optogenetic switches. In prior work, we used LOV2 to create a light-regulated Dihydrofolate Reductase (DHFR) enzyme and showed that structurally disperse mutations in DHFR were able to tune the allosteric response to light. However, it remained unclear how light allosterically activates DHFR, and how disperse mutations modulate the allosteric effect. A mechanistic understanding of these phenomena would improve our ability to rationally design new light-regulated enzymes. We used a combination of Eyring analysis and CD spectroscopy to quantify the relationship between allostery, catalytic activity, and global thermal stability. We found that the DHFR/LOV2 fusion was marginally stable at physiological temperatures. LOV2 photoactivation simultaneously: (1) thermally destabilized the fusion and (2) lowered the catalytic transition free energy of the lit state relative to the dark state. The energetic effect of light activation on the transition state free energy was composed of two opposing forces: a favorable reduction in the enthalpic transition state barrier offset by an entropic penalty. Allostery-tuning mutations in DHFR acted through this tradeoff, either accentuating the enthalpic benefit or minimizing the entropic penalty but never improving both. Many of the allostery tuning mutations showed a negative correlation between the light induced change in thermal stability and catalytic activity, suggesting an activity-stability tradeoff.
LOV2结构域通常被用作工程化光遗传学开关中基于光调控的来源。在之前的工作中,我们利用LOV2创建了一种光调控的二氢叶酸还原酶(DHFR),并表明DHFR中结构分散的突变能够调节对光的变构反应。然而,尚不清楚光如何变构激活DHFR,以及分散的突变如何调节变构效应。对这些现象的机制理解将提高我们合理设计新型光调控酶的能力。我们结合使用艾林分析和圆二色光谱来量化变构、催化活性和整体热稳定性之间的关系。我们发现,DHFR/LOV2融合蛋白在生理温度下稳定性较差。LOV2光激活同时:(1)使融合蛋白热不稳定,(2)相对于暗态降低了光照状态的催化转变自由能。光激活对过渡态自由能的能量效应由两种相反的力组成:焓过渡态势垒的有利降低被熵罚抵消。DHFR中的变构调节突变通过这种权衡起作用,要么增强焓益处,要么最小化熵罚,但不会同时改善两者。许多变构调节突变在热稳定性的光诱导变化和催化活性之间呈现负相关,表明存在活性-稳定性权衡。