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基于脓毒症患者外周血中细胞-细胞相互作用筛选预后核心基因

Screening of prognostic core genes based on cell-cell interaction in the peripheral blood of patients with sepsis.

作者信息

Li Shaolan, Chen Wenhao, Zhang Zhihong, Yuan Ling, Hu Yingchun, Chen Muhu

机构信息

Emergency Department of the Affiliated Hospital of Southwest Medical University, No. 25 Taiping Street, Jiangyang District, Luzhou, Sichuan, 646100, China.

Emergency Department of the Affiliated Traditional Chinese Medical Hospital of Southwest Medical University, No. 25 Taiping Street, Jiangyang District, Luzhou, Sichuan, 646100, China.

出版信息

Open Life Sci. 2024 Nov 26;19(1):20220999. doi: 10.1515/biol-2022-0999. eCollection 2024.

Abstract

Peripheral blood samples from 15 septic patients admitted within 24 h and 8 healthy volunteers were used to conduct RNA-seq. Quantitative PCR of THP1 cells was performed to investigate the expression levels of the selected key genes. A total of 1,128 differential genes were identified, 721 of which were upregulated and 407 were downregulated. These genes are mainly involved in neutrophil activation, T cell regulation, immune effector process regulation, cytokine receptor activity, and cytokine binding. The six target genes were ELANE, IL1R2, RAB13, RNASE3, FCGR1A, and TLR5. In the sepsis group, FCGR1A and TLR5 were positively associated with survival compared to ELANE, IL1R2, RAB13, and RNASE3, which were adversely associated with survival. Furthermore, a meta-analysis based on public databases revealed an increased expression of these six target genes in the peripheral blood of patients with sepsis. In addition, we discovered that monocytes primarily express these genes. Using qPCR, we confirmed that these six important genes were highly expressed in lipopolysaccharide-treated THP1 cells. In summary, these findings suggest that ELANE, IL1R2, RAB13, RNASE3, FCGR1A, and TLR5 may influence the prognosis of patients with sepsis and provide novel insights and potential avenues for the treatment of sepsis.

摘要

收集了24小时内入院的15名脓毒症患者和8名健康志愿者的外周血样本进行RNA测序。对THP1细胞进行定量PCR以研究所选关键基因的表达水平。共鉴定出1128个差异基因,其中721个上调,407个下调。这些基因主要参与中性粒细胞活化、T细胞调节、免疫效应过程调节、细胞因子受体活性和细胞因子结合。六个靶基因分别为ELANE、IL1R2、RAB13、RNASE3、FCGR1A和TLR5。在脓毒症组中,与ELANE、IL1R2、RAB13和RNASE3相比,FCGR1A和TLR5与生存率呈正相关,而ELANE、IL1R2、RAB13和RNASE3与生存率呈负相关。此外,基于公共数据库的荟萃分析显示,脓毒症患者外周血中这六个靶基因的表达增加。此外,我们发现单核细胞主要表达这些基因。通过qPCR,我们证实这六个重要基因在脂多糖处理的THP1细胞中高表达。总之,这些发现表明ELANE、IL1R2、RAB13、RNASE3、FCGR1A和TLR5可能影响脓毒症患者的预后,并为脓毒症的治疗提供新的见解和潜在途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f3c/11627055/fb7ba0e0928b/j_biol-2022-0999-fig001.jpg

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