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北极苔藓克氏褶口藓的染色体水平基因组组装与注释

Chromosome-level Genome Assembly and Annotation of the Arctic Moss Ptychostomum knowltonii.

作者信息

Ma Changling, Zhou Xuping, Huang Dan, Zhang Li, Yao Yifeng, Liu Yang, Dong Shanshan, Peng Tao

机构信息

School of Life Sciences, Guizhou Normal University, Guiyang 550025, China.

Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, China.

出版信息

Genome Biol Evol. 2025 Jan 6;17(1). doi: 10.1093/gbe/evae268.

Abstract

The polar regions host a diverse array of moss species that have evolved to thrive in extreme environments. These mosses exhibit remarkable adaptations, including tolerance to freezing temperatures, desiccation, and ultraviolet radiation. Despite their ecological significance, genomic data on these organisms are still limited, impeding our understanding of their evolutionary history and adaptive mechanisms in the context of climate change. In this study, we present the first chromosome-scale genome assembly and annotation of the Arctic moss Ptychostomum knowltonii. The assembled genome is 408.8 Mb in size, anchored to 12 pseudochromosomes, with a scaffold N50 of 32.61 Mb. Repetitive elements account for 56.24% of the genome. The genome contains 28,014 protein-coding genes, with a BUSCO completeness of 96.20%. This genomic resource will enable future comparative genomic studies, enhancing our understanding of how polar mosses may respond to a warming climate and shedding light on their evolutionary trajectories in persistently extreme environments.

摘要

极地地区拥有各种各样的苔藓物种,它们已经进化到能够在极端环境中茁壮成长。这些苔藓表现出显著的适应性,包括对低温、干燥和紫外线辐射的耐受性。尽管它们具有生态意义,但关于这些生物的基因组数据仍然有限,这阻碍了我们在气候变化背景下对其进化历史和适应性机制的理解。在这项研究中,我们展示了北极苔藓克氏褶口藓的首个染色体水平的基因组组装和注释。组装后的基因组大小为408.8兆字节,锚定在12条假染色体上,支架N50为32.61兆字节。重复元件占基因组的56.24%。该基因组包含28,014个蛋白质编码基因,BUSCO完整性为96.20%。这一基因组资源将推动未来的比较基因组研究,增进我们对极地苔藓如何应对气候变暖的理解,并揭示它们在持续极端环境中的进化轨迹。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61f/11704416/fd7fbbe1f447/evae268f1.jpg

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