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北极和南极苔藓的染色体水平基因组:肿胀曲柄藓和高山金发藓。

Chromosome-level genomes of Arctic and Antarctic mosses: Aulacomnium turgidum and Polytrichastrum alpinum.

作者信息

Zeng Yuying, Cai Yuqing, Zhou Xuping, Wang Sibo, Li Linzhou, Yao Yifeng, Yu Jin, Liu Xin, Yang Huanming, Wei Tong, Dong Shanshan, Liu Yang

机构信息

College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 101408, China.

BGI Research, Wuhan, 430074, China.

出版信息

Sci Data. 2025 Apr 29;12(1):705. doi: 10.1038/s41597-025-04960-7.

Abstract

Bryophytes play a crucial role in the ecosystems of polar regions. These simple plants are among the predominant vegetation types in both Arctic and Antarctic landscapes, where they contribute significantly to biodiversity and ecological stability. Here, we report the chromosome-level genomes of two polar moss species, the Arctic Aulacomnium turgidum and Antarctic Polytrichastrum alpinum. Utilizing a combination of Illumina short reads, Nanopore long reads, and Hi-C data, we assembled genomes of 277.84 Mb for A. turgidum and 498.33 Mb for P. alpinum, respectively. These assemblies were anchored to 11 chromosomes for A. turgidum and 8 chromosomes for P. alpinum. Both species exhibited a sex chromosome with distinct genomic characteristics. Gene annotations revealed 25,999 protein-coding genes in A. turgidum and 28,070 in P. alpinum. The high completeness of the gene space was validated via BUSCO, achieving impressive scores of 98.2% and 98.0%. These high-quality genomes provide critical resources for studying the adaptive evolution and stress tolerance mechanisms of mosses in extreme polar environments.

摘要

苔藓植物在极地生态系统中发挥着至关重要的作用。这些简单的植物是北极和南极景观中主要的植被类型之一,它们对生物多样性和生态稳定性做出了重大贡献。在此,我们报告了两种极地苔藓植物的染色体水平基因组,即北极的肿胀真藓(Aulacomnium turgidum)和南极的高山金发藓(Polytrichastrum alpinum)。利用Illumina短读长、Nanopore长读长和Hi-C数据的组合,我们分别组装了肿胀真藓2.7784亿碱基对和高山金发藓4.9833亿碱基对的基因组。这些组装结果分别锚定到肿胀真藓的11条染色体和高山金发藓的8条染色体上。两个物种都表现出具有独特基因组特征的性染色体。基因注释显示,肿胀真藓中有25999个蛋白质编码基因,高山金发藓中有28070个。通过BUSCO验证了基因空间的高完整性,分别获得了令人印象深刻的98.2%和98.0%的分数。这些高质量的基因组为研究苔藓植物在极端极地环境中的适应性进化和胁迫耐受机制提供了关键资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/024e/12041281/47fba5b31e67/41597_2025_4960_Fig1_HTML.jpg

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