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植物化合物橙皮苷、甜菊糖苷A和芦丁作为靶向分枝杆菌磷酸核糖焦磷酸合成酶治疗结核病的药物先导物。

Phytocompounds hesperidin, rebaudioside a and rutin as drug leads for the treatment of tuberculosis targeting mycobacterial phosphoribosyl pyrophosphate synthetase.

作者信息

Manthattil Vysyan Sneha, Suraj Prasanna Meera, Jayanandan Abhithaj, Gangadharan Arun Kumar, Chittalakkottu Sadasivan

机构信息

Department of Biotechnology & Microbiology, Kannur University, Thalassery, India.

Department of Molecular Biology, Kannur University, Thalassery, India.

出版信息

J Biomol Struct Dyn. 2024 Dec 11:1-15. doi: 10.1080/07391102.2024.2438363.

Abstract

The main aim of this study is to address the global health crisis posed by tuberculosis (TB) through the exploration of novel therapeutic strategies targeting Mycobacterial phosphoribosyl pyrophosphate synthetase (MtPrsA), an untried enzyme involved in essential metabolic pathways of . This enzyme plays a crucial role in cell wall synthesis, nucleotide biosynthesis and amino acid synthesis in Any hindrance to these may affect the growth and survival of the organism. Phytochemicals were systematically screened for potential inhibitors to MtPrsA. Subsequently, based on molecular docking studies, three compounds, namely, hesperidin, rebaudiosideA and rutin were selected. The binding stabilities of these compounds were analyzed using molecular dynamics simulation. Based on the RMSD score obtained, the binding stability of the compounds was confirmed. To validate the findings, an enzyme inhibition assay was done using recombinant MtPrsA. Ligation Independent Cloning (LIC cloning) method was used to produce recombinant His-tagged MtPrsA, followed by purification using Histrap columns. Enzyme kinetic studies unveiled the distinct modes of inhibition exhibited by each compound towards MtPrsA. RebaudiosideA and rutin emerged as competitive inhibitors, while hesperidin showcased a mixed inhibition profile. In conclusion, the study contributes valuable insights into potential therapeutic strategies for TB, through the exploration of alternative enzyme targets and the identification of phytochemical inhibitors. Notably, todate, no effective plant compounds have been reported as inhibitors to MtPrsA.

摘要

本研究的主要目的是通过探索针对分枝杆菌磷酸核糖焦磷酸合成酶(MtPrsA)的新型治疗策略,来应对由结核病(TB)引发的全球健康危机。MtPrsA是一种参与重要代谢途径但尚未尝试过的酶。该酶在结核分枝杆菌的细胞壁合成、核苷酸生物合成和氨基酸合成中起着关键作用。这些过程中的任何阻碍都可能影响该生物体的生长和存活。对植物化学物质进行了系统筛选,以寻找MtPrsA的潜在抑制剂。随后,基于分子对接研究,选择了三种化合物,即橙皮苷、莱鲍迪苷A和芦丁。使用分子动力学模拟分析了这些化合物的结合稳定性。根据获得的均方根偏差(RMSD)分数,证实了化合物的结合稳定性。为了验证这些发现,使用重组MtPrsA进行了酶抑制试验。采用不依赖连接的克隆(LIC克隆)方法制备重组His标签的MtPrsA,然后使用组氨酸柱进行纯化。酶动力学研究揭示了每种化合物对MtPrsA表现出的不同抑制模式。莱鲍迪苷A和芦丁表现为竞争性抑制剂,而橙皮苷则呈现出混合抑制模式。总之,本研究通过探索替代酶靶点和鉴定植物化学抑制剂,为结核病的潜在治疗策略提供了有价值的见解。值得注意的是,迄今为止,尚未有有效的植物化合物被报道为MtPrsA的抑制剂。

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