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塞尔达对于组蛋白基因调控是可有可无的。

Zelda is dispensable for histone gene regulation.

作者信息

O'Haren Tommy, Aoki Tsutomu, Rieder Leila E

机构信息

Department of Biology, Emory University, Atlanta, GA 30322.

Department of Molecular Biology, Princeton University, Princeton, NJ 08540.

出版信息

Mol Biol Cell. 2025 Feb 1;36(2):br3. doi: 10.1091/mbc.E24-01-0028. Epub 2024 Dec 11.

DOI:10.1091/mbc.E24-01-0028
PMID:39661467
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11809315/
Abstract

To ensure that the embryo can package exponentially increasing amounts of DNA, replication-dependent histones are some of the earliest transcribed genes from the zygotic genome. However, how the histone genes are identified is not known. The pioneer factor CLAMP regulates the embryonic histone genes and helps establish the histone locus body, a suite of factors that controls histone mRNA biosynthesis, but CLAMP is not unique to the histone genes. Zelda collaborates with CLAMP across the genome to regulate zygotic genome activation and target early activated genes. We hypothesized that Zelda helps identify histone genes for early embryonic expression. We found that Zelda targets the histone gene locus early during embryogenesis, prior to histone gene expression. However, depletion of in the early embryo does not affect histone mRNA levels or prevent the recruitment of other factors. These results suggest the earliest events responsible for specifying the zygotic histone genes remain undiscovered.

摘要

为确保胚胎能够包装数量呈指数级增长的DNA,依赖复制的组蛋白是合子基因组中最早转录的一些基因。然而,组蛋白基因是如何被识别的尚不清楚。先驱因子CLAMP调节胚胎组蛋白基因,并有助于建立组蛋白基因座体,这是一组控制组蛋白mRNA生物合成的因子,但CLAMP并非组蛋白基因所特有。Zelda在全基因组范围内与CLAMP协作,以调节合子基因组激活并靶向早期激活的基因。我们假设Zelda有助于识别用于早期胚胎表达的组蛋白基因。我们发现,在胚胎发生早期,在组蛋白基因表达之前,Zelda就靶向组蛋白基因座。然而,早期胚胎中Zelda的缺失并不影响组蛋白mRNA水平,也不会阻止其他因子的募集。这些结果表明,负责指定合子组蛋白基因的最早事件仍未被发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/475815278652/mbc-36-br3-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/c8f52c7efeb9/mbc-36-br3-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/8fba26667226/mbc-36-br3-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/475815278652/mbc-36-br3-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/c8f52c7efeb9/mbc-36-br3-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/8fba26667226/mbc-36-br3-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5c/11809315/475815278652/mbc-36-br3-g003.jpg

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本文引用的文献

1
Sequence reliance of the Drosophila context-dependent transcription factor CLAMP.果蝇上下文相关转录因子 CLAMP 的序列依赖性。
Genetics. 2024 Jul 8;227(3). doi: 10.1093/genetics/iyae060.
2
A bioinformatics screen reveals hox and chromatin remodeling factors at the Drosophila histone locus.生物信息学筛选揭示了果蝇组蛋白基因座上的同源盒和染色质重塑因子。
BMC Genom Data. 2023 Sep 21;24(1):54. doi: 10.1186/s12863-023-01147-0.
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Coordinating transcription and replication to mitigate their conflicts in early Drosophila embryos.协调转录和复制以减轻早期果蝇胚胎中的冲突。
Cell Rep. 2022 Oct 18;41(3):111507. doi: 10.1016/j.celrep.2022.111507.
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Spatial organization of transcribing loci during early genome activation in Drosophila.果蝇早期基因组激活过程中转录基因座的空间组织。
Curr Biol. 2021 Nov 22;31(22):5102-5110.e5. doi: 10.1016/j.cub.2021.09.027. Epub 2021 Oct 5.
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CLAMP and Zelda function together to promote zygotic genome activation.CLAMP 和 Zelda 共同作用促进合子基因组激活。
Elife. 2021 Aug 3;10:e69937. doi: 10.7554/eLife.69937.
6
Superresolution light microscopy of the histone locus body reveals a core-shell organization associated with expression of replication-dependent histone genes.超分辨率荧光显微镜观察组蛋白基因位点体显示与复制依赖性组蛋白基因表达相关的核壳结构。
Mol Biol Cell. 2021 Apr 19;32(9):942-955. doi: 10.1091/mbc.E20-10-0645. Epub 2021 Mar 31.
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histone locus body assembly and function involves multiple interactions.组蛋白基因座体的组装和功能涉及多种相互作用。
Mol Biol Cell. 2020 Jul 1;31(14):1525-1537. doi: 10.1091/mbc.E20-03-0176. Epub 2020 May 13.
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The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.早期果蝇胚胎中染色体配对的全基因组多层次结构。
Nat Commun. 2019 Oct 3;10(1):4486. doi: 10.1038/s41467-019-12211-8.
9
Histone concentration regulates the cell cycle and transcription in early development.组蛋白浓度调节早期发育过程中的细胞周期和转录。
Development. 2019 Oct 4;146(19):dev177402. doi: 10.1242/dev.177402.
10
The Drosophila Pioneer Factor Zelda Modulates the Nuclear Microenvironment of a Dorsal Target Enhancer to Potentiate Transcriptional Output.果蝇先驱因子 Zelda 调节 Dorsal 靶增强子的核微环境以增强转录输出。
Curr Biol. 2019 Apr 22;29(8):1387-1393.e5. doi: 10.1016/j.cub.2019.03.019. Epub 2019 Apr 11.