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基于人工智能的珊瑚物种鉴别:以大西洋星珊瑚复合体为例

AI-based coral species discrimination: A case study of the Siderastrea Atlantic Complex.

作者信息

Barbeitos Marcos Soares, Pérez Flávio Alberto, Olaya-Restrepo Julián, Winter Ana Paula Martins, Florindo João Batista, Laureano Estevão Esmi

机构信息

Laboratório de Evolução dos Organismos Marinhos, Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Brazil.

Departamento de Matemática Aplicada, Instituto de Matemática, Estatística e Computação Científica (IMECC), Universidade Estadual de Campinas, Campinas, Brazil.

出版信息

PLoS One. 2024 Dec 11;19(12):e0312494. doi: 10.1371/journal.pone.0312494. eCollection 2024.

DOI:10.1371/journal.pone.0312494
PMID:39661592
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11634003/
Abstract

Species delimitation in hard corals remains controversial even after 250+ years of taxonomy. Confusing taxonomy in Scleractinia is not the result of sloppy work: clear boundaries are hard to draw because most diagnostic characters are quantitative and subjected to considerable morphological plasticity. In this study, we argue that taxonomists may actually be able to visually discriminate among morphospecies, but fail to translate their visual perception into accurate species descriptions. In this article, we introduce automated quantification of morphological traits using computer vision (Completed Local Binary Patterns-CLBP) and test its efficiency on the problematic genus Siderastrea. An artificial neural network employing fuzzy logic (Θ-FAM), intrinsically formulated to deal with soft and subtle decision boundaries, was used to factor a priori species identification uncertainty into the supervised classification procedure. Machine learning statistics demonstrate that automated species identification using CLBP and Θ-FAM outperformed the combination of traditional morphometric characters and Θ-FAM, and was also superior to CLBP+LDA (Linear Discriminant Analysis). These results suggest that human discrimination ability can be emulated by the association of computer vision and artificial intelligence, a potentially valuable tool to overcome taxonomic impediment to end users working on hard corals.

摘要

即使经过250多年的分类学研究,硬珊瑚的物种界定仍然存在争议。石珊瑚目混乱的分类并非是工作马虎所致:明确的界限难以划定,因为大多数诊断特征是定量的,且具有相当大的形态可塑性。在本研究中,我们认为分类学家实际上或许能够在形态种之间进行视觉区分,但却无法将他们的视觉认知转化为准确的物种描述。在本文中,我们介绍了使用计算机视觉(完整局部二值模式 - CLBP)对形态特征进行自动量化,并在有问题的鹿角珊瑚属上测试其效率。一种采用模糊逻辑的人工神经网络(Θ - FAM),其本质上是为处理模糊和细微的决策边界而设计的,被用于将先验物种识别的不确定性纳入监督分类过程。机器学习统计表明,使用CLBP和Θ - FAM进行自动物种识别优于传统形态测量特征与Θ - FAM的组合,并且也优于CLBP + LDA(线性判别分析)。这些结果表明,计算机视觉与人工智能的结合可以模拟人类的辨别能力,这对于致力于硬珊瑚研究的终端用户来说是一种潜在的有价值的工具,可用于克服分类学障碍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/58189a92bddf/pone.0312494.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/499240733de9/pone.0312494.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/a7e01c14e502/pone.0312494.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/58189a92bddf/pone.0312494.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/499240733de9/pone.0312494.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/a7e01c14e502/pone.0312494.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f6/11634003/58189a92bddf/pone.0312494.g003.jpg

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