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使用基于L片段的实时逆转录聚合酶链反应方法对里夫滕静脉病毒感染进行分子诊断。

Molecular Diagnosis of Phlebovirus riftense Infection Using an L-Segment-Based Real-Time RT-PCR Method.

作者信息

Pédarrieu Aurélie, Cêtre-Sossah Catherine

机构信息

CIRAD, UMR ASTRE, Montpellier, France.

ASTRE, University of Montpellier, CIRAD, INRAe, Montpellier, France.

出版信息

Methods Mol Biol. 2025;2893:37-49. doi: 10.1007/978-1-0716-4338-9_4.

DOI:10.1007/978-1-0716-4338-9_4
PMID:39671028
Abstract

Rift Valley fever (RVF) is one of the main vector-borne zoonotic diseases that affects a wide range of ruminants and humans in Africa and the Arabian Peninsula.Several techniques involving cell culture and molecular biology methods have been developed to diagnose RVF infection. Success partly relies on sending samples to a national or reference laboratory in good conditions and having the capacity to perform the appropriate diagnostic test in the matrix of interest during the period of viremia where high loads of viral particles are present. Conventional and duplex/multiplex real-time reverse transcriptase polymerase chain reaction (RT-PCR) assays are currently the most rapid and sensitive molecular tests for the detection and quantification of Rift Valley fever virus (RVFV) during outbreaks. The one-step real-time duplex RT-PCR technique that is detailed in this chapter is based on the L segment of RVFV. Results must be carefully validated and interpreted, taking into account the results of both positive and negative controls.

摘要

裂谷热(RVF)是主要的媒介传播人畜共患病之一,在非洲和阿拉伯半岛影响着广泛的反刍动物和人类。已经开发了几种涉及细胞培养和分子生物学方法的技术来诊断裂谷热感染。成功部分依赖于在良好条件下将样本送往国家或参考实验室,并具备在病毒血症期间(存在高负荷病毒颗粒)在所关注的基质中进行适当诊断测试的能力。常规和双重/多重实时逆转录聚合酶链反应(RT-PCR)检测目前是疫情期间检测和定量裂谷热病毒(RVFV)最快速、灵敏的分子检测方法。本章详细介绍的一步法实时双重RT-PCR技术基于裂谷热病毒的L片段。必须仔细验证和解释结果,同时考虑阳性和阴性对照的结果。

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Molecular Diagnosis of Phlebovirus riftense Infection Using an L-Segment-Based Real-Time RT-PCR Method.使用基于L片段的实时逆转录聚合酶链反应方法对里夫滕静脉病毒感染进行分子诊断。
Methods Mol Biol. 2025;2893:37-49. doi: 10.1007/978-1-0716-4338-9_4.
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本文引用的文献

1
Rift Valley Fever virus M and L genome segment detection: a comparison of field-deployable reverse transcription insulated isothermal PCR (RT-iiPCR) and laboratory-based multiplex reverse transcription real-time PCR.裂谷热病毒M和L基因组片段检测:现场可部署的逆转录绝缘等温PCR(RT-iiPCR)与基于实验室的多重逆转录实时PCR的比较
J Clin Microbiol. 2024 Mar 13;62(3):e0043023. doi: 10.1128/jcm.00430-23. Epub 2024 Feb 2.
2
Development and Validation of Rapid Colorimetric Reverse Transcription Loop-Mediated Isothermal Amplification for Detection of Rift Valley Fever Virus.用于检测裂谷热病毒的快速比色逆转录环介导等温扩增技术的开发与验证
Adv Virol. 2023 Jan 30;2023:1863980. doi: 10.1155/2023/1863980. eCollection 2023.
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Whole-Genome Sequencing of Six Neglected Arboviruses Circulating in Africa Using Sequence-Independent Single Primer Amplification (SISPA) and MinION Nanopore Technologies.
使用序列独立单引物扩增(SISPA)和MinION纳米孔技术对在非洲传播的六种被忽视虫媒病毒进行全基因组测序。
Pathogens. 2022 Dec 8;11(12):1502. doi: 10.3390/pathogens11121502.
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Simultaneous Detection of Ebola Virus and Pathogens Associated With Hemorrhagic Fever by an Oligonucleotide Microarray.利用寡核苷酸微阵列同时检测埃博拉病毒及与出血热相关的病原体
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The challenging management of Rift Valley Fever in humans: literature review of the clinical disease and algorithm proposal.裂谷热在人类中的挑战性管理:临床疾病文献综述及算法建议。
Ann Clin Microbiol Antimicrob. 2020 Jan 22;19(1):4. doi: 10.1186/s12941-020-0346-5.
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Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics.用于病毒性出血热诊断的多重扩增和下一代测序方法的开发及初步评估
PLoS Negl Trop Dis. 2017 Nov 20;11(11):e0006075. doi: 10.1371/journal.pntd.0006075. eCollection 2017 Nov.
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Med Vet Entomol. 2017 Dec;31(4):365-372. doi: 10.1111/mve.12254. Epub 2017 Aug 7.
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Rift valley fever epidemic in Niger near border with Mali.在与马里接壤的边境附近的尼日尔出现裂谷热疫情。
Lancet Infect Dis. 2016 Dec;16(12):1319-1320. doi: 10.1016/S1473-3099(16)30477-7. Epub 2016 Nov 15.
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Notes from the Field: Rift Valley Fever Response - Kabale District, Uganda, March 2016.现场记录:裂谷热应对措施——乌干达卡巴莱区,2016 年 3 月。
MMWR Morb Mortal Wkly Rep. 2016 Nov 4;65(43):1200-1201. doi: 10.15585/mmwr.mm6543a5.