Sinha Tamali, Talukdar Narayan Chandra
Biodiversity and Ecosystem Research, Institute of Advanced Study in Science and Technology, Guwahati, Assam 781035 India.
Department of Molecular Biology and Biotechnology, Cotton University (CU), Pan Bazaar, Guwahati, Assam 781001 India.
Indian J Microbiol. 2024 Dec;64(4):1587-1597. doi: 10.1007/s12088-023-01184-4. Epub 2024 Feb 10.
Our previous study explored the bacterial endophytic diversity in a certain quantity of mustard seeds using culture dependent method by development of new isolation strategies. No bacterial colony was initially observed in supernatant obtained after centrifugation of mustard seed suspension. This was later overcome by usage of surfactant whereas pellet part showed presence of bacterial colonies on media. In our present study, presence of bacteria was examined in supernatant and whether the diversity was similar to that of pellet and seeds by culture independent approach. In addition, growth of bacterial colonies on media is explained using GC-MS. In this study, was the dominant bacterial phyla followed by in pellet, supernatant and seed. This indicated that bacteria were present in supernatant but may not be viable when plated on media. This is either due to antimicrobial compounds or oil-imposed difficulty during their isolation which might have hindered their survival. GC-MS study revealed the presence of compounds with antimicrobial property as suggested by previous literature. Our research conducts fundamental investigations to address the primary objective of understanding the bacterial diversity in mustard seed, pellet, and supernatant. Further research using workflows of metagenomics and metabolomics approaches can enrich our understanding ofthe diversity of microorganisms in seeds.
我们之前的研究通过开发新的分离策略,采用依赖培养的方法探索了一定数量芥菜种子中的细菌内生多样性。在芥菜种子悬浮液离心后获得的上清液中,最初未观察到细菌菌落。这一问题后来通过使用表面活性剂得以解决,而沉淀部分在培养基上显示出有细菌菌落。在我们目前的研究中,通过不依赖培养的方法检查了上清液中细菌的存在情况,以及其多样性是否与沉淀和种子的相似。此外,使用气相色谱 - 质谱联用仪(GC-MS)解释了细菌菌落在培养基上的生长情况。在这项研究中,[此处原文缺失具体细菌门类信息]是沉淀、上清液和种子中占主导地位的细菌门类,其次是[此处原文缺失具体细菌门类信息]。这表明上清液中存在细菌,但接种到培养基上时可能无法存活。这要么是由于抗菌化合物,要么是由于分离过程中油造成的困难,这可能阻碍了它们的存活。气相色谱 - 质谱联用仪(GC-MS)研究揭示了如先前文献所表明的具有抗菌特性的化合物的存在。我们的研究进行了基础调查,以实现理解芥菜种子、沉淀和上清液中细菌多样性这一主要目标。使用宏基因组学和代谢组学方法的工作流程进行进一步研究,可以丰富我们对种子中微生物多样性的理解。