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社会运动性的量化表明了不同的菌落生长阶段。

Quantification of social motility indicates different colony growth phases.

作者信息

Kuhn Andreas, Krüger Timothy, Schüttler Magdalena, Engstler Markus, Fischer Sabine C

机构信息

Center for Computational and Theoretical Biology, Julius-Maximilians-Universität Würzburg, Biocenter, Klara-Oppenheimer-Weg 32, Würzburg 97074, Germany.

Department of Cell and Developmental Biology, Julius-Maximilians-Universität Würzburg, Biocenter, Am Hubland, Würzburg 97074, Germany.

出版信息

J R Soc Interface. 2024 Dec;21(221):20240469. doi: 10.1098/rsif.2024.0469. Epub 2024 Dec 18.

Abstract

colonies of the flagellated parasite exhibit characteristic fingering instability patterns. To enable data-driven and data-validated mechanistic modelling of these complex growth processes, it is crucial to first establish appropriate quantitative metrics beyond qualitative image comparisons. We present a quantification approach based on two scale-free metrics designed to characterize the shape of two-dimensional colonies. Originally developed for yeast colonies, we adapted, modified and extended this analysis pipeline for the system. By combining these quantitative measurements with colony growth simulations based on the Eden model, we identified two distinct growth phases in social motility-exhibiting colonies: an initial phase of mainly circular expansion, followed by a transition to an almost exclusive finger-growing phase. These phases remain robust with increasing cell numbers and upon partial inhibition of finger formation. A newly developed anisotropy index reveals that partial inhibition leads to increased colony anisotropy over time. Our results provide objective measurements that advance the understanding of social motility and serve as a foundation for future mechanistic modelling efforts. Furthermore, our approach offers a blueprint for investigations of other colony-forming microorganisms, such as yeast or bacteria, emphasizing the broader applicability of developing appropriate metrics for complex biological phenomena.

摘要

这种有鞭毛的寄生虫菌落呈现出典型的指状不稳定性模式。为了对这些复杂的生长过程进行数据驱动和数据验证的机理建模,首先建立超越定性图像比较的适当定量指标至关重要。我们提出了一种基于两个无标度指标的量化方法,旨在表征二维菌落的形状。该方法最初是为酵母菌落开发的,我们对其进行了调整、修改和扩展,以适用于该系统。通过将这些定量测量与基于伊登模型的菌落生长模拟相结合,我们在表现出群体运动性的菌落中确定了两个不同的生长阶段:一个主要是圆形扩展的初始阶段,随后过渡到几乎完全是指状生长的阶段。随着细胞数量的增加以及在手指形成部分受到抑制的情况下,这些阶段仍然保持稳定。一个新开发的各向异性指数表明,部分抑制会导致菌落各向异性随时间增加。我们的结果提供了客观的测量方法,有助于增进对群体运动性的理解,并为未来的机理建模工作奠定基础。此外,我们的方法为研究其他形成菌落的微生物(如酵母或细菌)提供了一个蓝图,强调了为复杂生物现象开发适当指标的更广泛适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e50e/11653114/758d8880b58f/rsif.2024.0469.f001.jpg

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