Girão Mariana, Rego Adriana, Fonseca Ana C, Cao Weiwei, Jia Zhongjun, Urbatzka Ralph, Leão Pedro N, Carvalho Maria F
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.
ICBAS - School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal.
Microb Biotechnol. 2024 Dec;17(12):e70058. doi: 10.1111/1751-7915.70058.
Actinomycetota are unrivalled producers of bioactive natural products, with strains living in association with macroalgae representing a prolific-yet largely unexplored-source of specialised chemicals. In this work, we have investigated the bioactive potential of Actinomycetota from macroalgae through culture-dependent and -independent approaches. A bioprospecting pipeline was applied to a collection of 380 actinobacterial strains, recovered from two macroalgae species collected in the Portuguese northern shore-Codium tomentosum and Chondrus crispus-in order to explore their ability to produce antibacterial, antifungal, anticancer and lipid-reducing compounds. Around 43% of the crude extracts showed activity in at least one of the screenings performed: 111 presented antimicrobial activity at 1 mg/mL, 83 significantly decreased cancer cells viability at 15 μg/mL and 5 reduced lipid content in zebrafish > 60% at 15 ug/mL. Dereplication of active extracts unveiled the presence of compounds that could explain most of the recorded results, but also unknown molecules in the metabolome of several strains, highlighting the opportunity for discovery. The bioactive potential of the actinobacterial community from the same macroalgae specimens, which served as the source for the aforementioned Actinomycetota collection, was also explored through metagenomics analysis, allowing to obtain a broader picture of its functional diversity and novelty. A total of 133 biosynthetic gene clusters recovered from metagenomic contigs and metagenome assembled genomes (MAGs). These were grouped into 91 gene cluster families, 83 of which shared less than 30% of similarity to database entries. Our findings provided by culture-dependent and -independent approaches underscore the potential held by actinomycetes from macroalgae as reservoirs for novel bioactive natural products.
放线菌门是生物活性天然产物的无与伦比的生产者,与大型藻类共生的菌株代表了一种丰富但在很大程度上未被探索的特殊化学品来源。在这项工作中,我们通过依赖培养和不依赖培养的方法研究了来自大型藻类的放线菌门的生物活性潜力。一种生物勘探流程应用于从葡萄牙北部海岸采集的两种大型藻类——绒毛仙菜和皱波角叉菜——中回收的380株放线菌菌株的集合,以探索它们产生抗菌、抗真菌、抗癌和降脂化合物的能力。大约43%的粗提物在至少一项所进行的筛选中显示出活性:111种在1 mg/mL时具有抗菌活性,83种在15 μg/mL时显著降低癌细胞活力,5种在15 μg/mL时使斑马鱼的脂质含量降低超过60%。对活性提取物进行去重复分析揭示了可能解释大部分记录结果的化合物的存在,但也发现了几种菌株代谢组中的未知分子,突出了发现的机会。还通过宏基因组学分析探索了来自相同大型藻类标本的放线菌群落的生物活性潜力,这些标本是上述放线菌门菌株集合的来源,从而能够更全面地了解其功能多样性和新颖性。从宏基因组重叠群和宏基因组组装基因组(MAG)中总共回收了133个生物合成基因簇。这些被分为91个基因簇家族,其中83个与数据库条目共享的相似性不到30%。我们通过依赖培养和不依赖培养的方法得出的结果强调了来自大型藻类的放线菌作为新型生物活性天然产物储存库的潜力。