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一名腹泻婴儿的产肠毒素菌株2-078382-3的全基因组序列

Complete genome sequence of an enterotoxigenic strain 2-078382-3 from an infant with diarrhea.

作者信息

Lee Eunbi, Kang Heekyoung, Song Hyun Beom, Yeom Jinki

机构信息

Department of Biomedical Science, College of Medicine, Seoul National University, Seoul, South Korea.

Cancer Research Institute, Seoul National University, Seoul, South Korea.

出版信息

Microbiol Resour Announc. 2025 Feb 11;14(2):e0058724. doi: 10.1128/mra.00587-24. Epub 2024 Dec 20.

Abstract

This study presents that strain 2-078382-3, isolated from an infant with diarrhea, has a 5.2 million base pair chromosome with a 43.2% GC content and a 5,600 base pairs plasmid pBFP53 with a 39.6% GC content. The strain contains 4,262 genes, including 4,105 coding sequences.

摘要

本研究表明,从一名腹泻婴儿分离出的菌株2-078382-3有一条520万个碱基对的染色体,GC含量为43.2%,还有一个5600个碱基对的质粒pBFP53,GC含量为39.6%。该菌株包含4262个基因,其中包括4105个编码序列。

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本文引用的文献

1
Polypolish: Short-read polishing of long-read bacterial genome assemblies.多聚波兰:长读细菌基因组组装的短读抛光。
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
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Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
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Genomic Diversity of Enterotoxigenic Strains of Bacteroides fragilis.脆弱拟杆菌产肠毒素菌株的基因组多样性
PLoS One. 2016 Jun 27;11(6):e0158171. doi: 10.1371/journal.pone.0158171. eCollection 2016.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.

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