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重新审视染色质可及性:从压缩到动态相互作用

Rethinking chromatin accessibility: from compaction to dynamic interactions.

作者信息

Fillot Tom, Mazza Davide

机构信息

Università Vita-Salute San Raffaele, Via Olgettina 58, 20132 Milan, Italy.

Università Vita-Salute San Raffaele, Via Olgettina 58, 20132 Milan, Italy; IRCCS Ospedale San Raffaele, Experimental Imaging Center, Via Olgettina 58, 20132 Milan, Italy.

出版信息

Curr Opin Genet Dev. 2025 Feb;90:102299. doi: 10.1016/j.gde.2024.102299. Epub 2024 Dec 19.

Abstract

The genome is traditionally divided into condensed heterochromatin and open euchromatin. However, recent findings challenge this binary classification and the notion that chromatin condensation solely governs the accessibility of transcription factors (TFs) and, consequently, gene expression. Instead, chromatin accessibility is emerging as a factor-specific property that is influenced by multiple determinants. These include the mobility of the chromatin fiber, the capacity of TFs to engage repeatedly with it through multivalent interactions, and the four-dimensional organization of its surrounding diffusible space. Unraveling the molecular and biophysical principles that render a genomic target truly accessible remains a significant challenge, but innovative methods for locally perturbing chromatin, coupled with microscopy techniques that offer single-molecule sensitivity, provide an exciting experimental playground to test new hypotheses.

摘要

传统上,基因组被分为浓缩的异染色质和松散的常染色质。然而,最近的研究结果对这种二元分类以及染色质凝聚单独决定转录因子(TFs)的可及性并进而决定基因表达的观点提出了挑战。相反,染色质可及性正成为一种受多种因素影响的因子特异性特性。这些因素包括染色质纤维的流动性、TFs 通过多价相互作用与其反复结合的能力以及其周围可扩散空间的四维组织。阐明使基因组靶点真正可及的分子和生物物理原理仍然是一项重大挑战,但用于局部扰动染色质的创新方法,再加上具有单分子灵敏度的显微镜技术,为检验新假设提供了一个令人兴奋的实验平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8e8/11793080/f4993c6df9bb/gr1.jpg

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