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用于解析蛋白质中铜与富含甲硫氨酸结构域之间相互作用的仿生假肽

Biomimetic Pseudopeptides to Decipher the Interplay between Cu and Methionine-Rich Domains in Proteins.

作者信息

Badillo-Gómez Joel I, Suarez-Antuña Irene, Mazurenko Ievgen, Biaso Frédéric, Pécaut Jacques, Lojou Elisabeth, Delangle Pascale, Hostachy Sarah

机构信息

Univ. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.

Aix Marseille Univ, CNRS, Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, 31 Chemin Aiguier, 13402, Marseille, France.

出版信息

Chemistry. 2025 Feb 20;31(11):e202403896. doi: 10.1002/chem.202403896. Epub 2025 Jan 9.

Abstract

Maintaining tightly copper homeostasis is crucial for the survival of all living organisms, in particular microorganisms like bacteria. They have evolved a number of proteins to capture, transport and deliver Cu(I), while avoiding Fenton-like reactions. Some Cu proteins exhibit methionine-rich (Met-rich) domains, whose role remains elusive. In this work, we designed biomimetic compounds recapitulating the possible Cu(I) binding sites in these domains, in order to examine the parameters important for Cu(I) binding. Five different biomimetic pseudopeptides were synthesized, exhibiting either three methionines or two methionines and a third amino acid likely to be present in the Met-rich domain. The affinities for Cu(I) of these model binding sites were determined, as well as their redox properties and behavior in the presence of Cu(II). Our results highlight the importance of Met residues, and their abundance in Met-rich domains, to efficiently bind Cu(I) in the periplasmic space.

摘要

维持严格的铜稳态对于所有生物的生存至关重要,尤其是对于像细菌这样的微生物。它们已经进化出许多蛋白质来捕获、运输和传递Cu(I),同时避免类似芬顿反应。一些铜蛋白具有富含甲硫氨酸(Met-rich)的结构域,其作用仍然难以捉摸。在这项工作中,我们设计了模拟这些结构域中可能的Cu(I)结合位点的仿生化合物,以研究对Cu(I)结合重要的参数。合成了五种不同的仿生假肽,它们要么含有三个甲硫氨酸,要么含有两个甲硫氨酸和一个可能存在于富含甲硫氨酸结构域中的第三种氨基酸。测定了这些模型结合位点对Cu(I)的亲和力,以及它们在Cu(II)存在下的氧化还原性质和行为。我们的结果强调了甲硫氨酸残基及其在富含甲硫氨酸结构域中的丰度对于在周质空间中有效结合Cu(I)的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/094b/11840665/cd40b6821a36/CHEM-31-e202403896-g005.jpg

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