Nottoli Tommaso, Bondanza Mattia, Lipparini Filippo, Mennucci Benedetta
Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy.
J Comput Chem. 2025 Jan 5;46(1):e27550. doi: 10.1002/jcc.27550.
We present a polarizable embedding quantum mechanics/molecular mechanics (QM/MM) framework for ground- and excited-state Complete Active Space Self-Consistent Field (CASSCF) calculations on molecules within complex environments, such as biological systems. These environments are modeled using the AMOEBA polarizable force field. This approach is implemented by integrating the OpenMMPol library with the CFour quantum chemistry software suite. The implementation supports both single-point energy evaluations and geometry optimizations, facilitated by the availability of analytical gradients. We demonstrate the methodology by applying it to two distinct photoreceptors, exploring the impact of the protein environment on the structural and photophysical properties of their embedded chromophores.
我们提出了一种可极化嵌入量子力学/分子力学(QM/MM)框架,用于在复杂环境(如生物系统)中的分子进行基态和激发态完全活性空间自洽场(CASSCF)计算。这些环境使用AMOEBA可极化力场进行建模。该方法通过将OpenMMPol库与CFour量子化学软件套件集成来实现。由于有解析梯度,该实现支持单点能量评估和几何优化。我们通过将该方法应用于两种不同的光感受器来展示该方法,探索蛋白质环境对其嵌入发色团的结构和光物理性质的影响。