Ripa Adriana, Palacios-Gonzalez María Jesús, Díaz-Caballero José A, Espinosa Antonio, Zalba Francisco Javier, García-Zapata Juan Luis, Fernádez-García José Luis
Genetic and Animal Breeding, Faculty of Veterinary, Universidad de Extremadura, Cáceres, 10071, Spain.
Dirección General de Sostenibilidad, Junta de Extremadura, Mérida, 06800, España.
Mol Biol Rep. 2024 Dec 26;52(1):82. doi: 10.1007/s11033-024-10160-0.
Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrenaicus is currently threatened throughout its range, and cohabits with Nemys anomalus, in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation.
Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of G. pyrenaicus and N. anomalus, and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary.
This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.
野生动物保护与管理旨在扭转种群数量下降的趋势,而那些易危或濒危种群则需要最大程度的保护努力。在此背景下,非侵入性采样已被评估为一种报告猎物/捕食者影响的方法。目前,比利牛斯鼬鼹在其整个分布范围内都受到威胁,并且在西班牙埃斯特雷马杜拉与异鼹共存。有迹象表明存在美国水貂和水獭的捕食行为,但前者被认为是一个严重的保护问题。本研究聚焦于基于逆转录聚合酶链式反应(RT-PCR)和DNA测序的分子方法的应用,因为它可以揭示入侵性捕食者是如何伤害鼬鼹或伊比利亚水鼩的,以及这些基因工具如何用于检测捕食行为。
接收了五个样本(粪便和胃内容物),并使用TaqMan探针进行RT-PCR分析,同时靶向比利牛斯鼬鼹和异鼹的细胞色素b(cytb)基因,评估这两种小型哺乳动物作为猎物的存在情况。通过使用核视黄醇结合蛋白(IRBP)基因的桑格测序法鉴定捕食者。这些分析为识别入侵物种提供了一个有力的工具,就像在这个案例中一样,但通过BLAST搜索进行比较序列比对进一步确认也是必要的。
本研究有助于突出利用捕食者粪便样本同时监测和区分对特定小型哺乳动物的捕食情况。还支持将从捕食者样本中获得的高灵敏度DNA分析作为监测其对猎物种群影响的一种额外方法。