Portelli Charlene, Seria Elisa, Attard Ritienne, Barzine Mitra, Esquinas-Roman Eva M, Borg Carbott Francesca, Cassar Karen, Vella Matthew, Scicluna Brendon P, Ebejer Jean-Paul, Farrugia Rosienne, Bezzina Wettinger Stephanie
Department of Applied Biomedical Science, Faculty of Health Sciences, University of Malta, Msida, 2080, MSD, Malta.
Department of Medicine, Faculty of Medicine and Surgery, University of Malta, Msida, 2080, MSD, Malta.
Sci Rep. 2024 Dec 28;14(1):30716. doi: 10.1038/s41598-024-80287-4.
There is much interest in analysing RNA, particularly with RNA Sequencing, across both research and diagnostic domains. However, its inherent instability renders it susceptible to degradation. Given the imperative for RNA integrity in such applications, proper storage and biobanking of blood samples and successful subsequent RNA isolation is essential to guarantee optimal integrity for downstream analyses. Especially for larger collections, it would be particularly beneficial if these methods would additionally offer affordability, minimal blood volume requirements and also long-term storage. In this study, RNA of high quality, suitable for transcriptomics, has been successfully isolated from 400 µL of EDTA and citrated whole blood samples in Boom's lysis buffer stored at -85 °C for 10 years. Isolation was carried out using a modified Zymo Research Quick-RNA kit protocol. This isolation method showed significant improvement in RNA integrity when compared to RNA extracted using the original Boom method. RNA Sequencing provided high-quality data comparable to that of other studies using recently frozen blood in RNA stabilisation tubes. Additionally, sequencing data from blood collected in citrate and EDTA anticoagulants also showed excellent correlation.
在研究和诊断领域,人们对分析RNA尤其是进行RNA测序有着浓厚兴趣。然而,RNA固有的不稳定性使其易于降解。鉴于此类应用中RNA完整性的必要性,血液样本的妥善储存和生物样本库保存以及后续成功的RNA分离对于保证下游分析的最佳完整性至关重要。特别是对于较大规模的样本收集,如果这些方法还能提供可承受性、对血液量要求最小且能长期储存,那就特别有益了。在本研究中,已成功从储存在-85°C达10年的400µL乙二胺四乙酸(EDTA)和枸橼酸盐全血样本中,于Boom裂解缓冲液中分离出适用于转录组学的高质量RNA。使用改良的Zymo Research Quick-RNA试剂盒方案进行分离。与使用原始Boom方法提取的RNA相比,这种分离方法在RNA完整性方面有显著改善。RNA测序提供了与其他使用近期冷冻于RNA稳定管中的血液的研究相当的高质量数据。此外,来自用枸橼酸盐和EDTA抗凝剂采集的血液的测序数据也显示出极好的相关性。