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胸腺模拟细胞的跨物种分析揭示了其在进化上古老的起源以及保守和物种特异性的元素。

Cross-species analyses of thymic mimetic cells reveal evolutionarily ancient origins and both conserved and species-specific elements.

作者信息

Huisman Brooke D, Michelson Daniel A, Rubin Sara A, Kohlsaat Katherine, Gomarga Wilson, Fang Yuan, Lee Ji Myung, Del Nido Pedro, Nathan Meena, Benoist Christophe, Zon Leonard, Mathis Diane

机构信息

Department of Immunology, Harvard Medical School, Boston, MA, USA.

Department of Immunology, Harvard Medical School, Boston, MA, USA; Harvard-MIT Program in Health Sciences and Technology, Harvard Medical School, Boston, MA, USA; PhD Program in Immunology, Harvard Medical School, Boston, MA, USA.

出版信息

Immunity. 2025 Jan 14;58(1):108-123.e7. doi: 10.1016/j.immuni.2024.11.025. Epub 2024 Dec 27.

DOI:10.1016/j.immuni.2024.11.025
PMID:39731911
原文链接:
https://pmc.ncbi.nlm.nih.gov/articles/PMC11735279/
Abstract

Thymic mimetic cells are molecular hybrids between medullary-thymic-epithelial cells (mTECs) and diverse peripheral cell types. They are involved in eliminating autoreactive T cells and can perform supplementary functions reflective of their peripheral-cell counterparts. Current knowledge about mimetic cells derives largely from mouse models. To provide the high resolution that proved revelatory for mice, we performed single-cell RNA sequencing on purified mimetic-cell compartments from human pediatric donors. The single-cell profiles of individual donors were surprisingly similar, with diversification of neuroendocrine subtypes and expansion of the muscle subtype relative to mice. Informatic and imaging studies on the muscle-mTEC population highlighted a maturation trajectory suggestive of skeletal-muscle differentiation, some striated structures, and occasional cellular groupings reminiscent of neuromuscular junctions. We also profiled thymic mimetic cells from zebrafish. Integration of data from the three species identified species-specific adaptations but substantial interspecies conservation, highlighting the evolutionarily ancient nature of mimetic mTECs. Our findings provide a landscape view of human mimetic cells, with anticipated relevance in autoimmunity.

摘要

胸腺模拟细胞是髓质胸腺上皮细胞(mTECs)与多种外周细胞类型之间的分子杂交体。它们参与清除自身反应性T细胞,并能执行与其外周细胞对应物相关的补充功能。目前关于模拟细胞的知识主要来自小鼠模型。为了提供对小鼠具有启示意义的高分辨率信息,我们对来自人类儿科供体的纯化模拟细胞区室进行了单细胞RNA测序。各个供体的单细胞图谱惊人地相似,相对于小鼠,神经内分泌亚型多样化,肌肉亚型有所扩展。对肌肉 - mTEC群体的信息学和成像研究突出了一条成熟轨迹,提示骨骼肌分化、一些横纹结构以及偶尔出现的让人联想到神经肌肉接头的细胞聚集。我们还分析了斑马鱼的胸腺模拟细胞。来自这三个物种的数据整合确定了物种特异性适应,但也存在大量种间保守性,突出了模拟mTECs在进化上的古老性质。我们的研究结果提供了人类模拟细胞的全景图,有望与自身免疫相关。

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引用本文的文献

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Deconstructing the Thymic Microenvironment Through Genesis to Senescence.从发生到衰老解析胸腺微环境
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2
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Nature. 2025 Jun 11. doi: 10.1038/s41586-025-09148-y.
3
It's Time to Unite: Diversity and Coordination of Thymic Stromal Cells for T Cell Selection and Organ Integrity.是时候团结起来了:胸腺基质细胞在T细胞选择和器官完整性中的多样性与协调性

本文引用的文献

1
A spatial human thymus cell atlas mapped to a continuous tissue axis.空间人类胸腺细胞图谱绘制到连续的组织轴上。
Nature. 2024 Nov;635(8039):708-718. doi: 10.1038/s41586-024-07944-6. Epub 2024 Nov 20.
2
Thymic Mimetic Cells: Ontogeny as Immunology.胸腺模拟细胞:发生作为免疫学。
Annu Rev Cell Dev Biol. 2024 Oct;40(1):283-300. doi: 10.1146/annurev-cellbio-112122-023316. Epub 2024 Sep 21.
3
AIRE relies on Z-DNA to flag gene targets for thymic T cell tolerization.AIRE 依赖于 Z-DNA 来标记胸腺 T 细胞耐受的基因靶标。
Immunol Rev. 2025 Jul;332(1):e70040. doi: 10.1111/imr.70040.
4
Thymic Mimetic Cells: Evolutionarily Ancient Mirrors of the Periphery.胸腺模拟细胞:外周的进化古老镜像
Immunol Rev. 2025 May;331(1):e70028. doi: 10.1111/imr.70028.
Nature. 2024 Apr;628(8007):400-407. doi: 10.1038/s41586-024-07169-7. Epub 2024 Mar 13.
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scGPT: toward building a foundation model for single-cell multi-omics using generative AI.scGPT:迈向使用生成式人工智能构建单细胞多组学基础模型
Nat Methods. 2024 Aug;21(8):1470-1480. doi: 10.1038/s41592-024-02201-0. Epub 2024 Feb 26.
5
Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.簇细胞和成纤维细胞通过 ILC2 介导的 2 型免疫应答促进胸腺再生。
Sci Immunol. 2024 Jan 12;9(91):eabq6930. doi: 10.1126/sciimmunol.abq6930.
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Benchmarking strategies for cross-species integration of single-cell RNA sequencing data.用于单细胞 RNA 测序数据跨物种整合的基准测试策略。
Nat Commun. 2023 Oct 14;14(1):6495. doi: 10.1038/s41467-023-41855-w.
7
Thymic mimetic cells function beyond self-tolerance.胸腺模拟细胞的功能超越了自身耐受。
Nature. 2023 Oct;622(7981):164-172. doi: 10.1038/s41586-023-06512-8. Epub 2023 Sep 6.
8
Defining the identity and the niches of epithelial stem cells with highly pleiotropic multilineage potency in the human thymus.在人类胸腺中具有高度多能性多谱系潜能的上皮干细胞的定义及其生态位。
Dev Cell. 2023 Nov 20;58(22):2428-2446.e9. doi: 10.1016/j.devcel.2023.08.017. Epub 2023 Aug 30.
9
Cross-organ single-cell transcriptome profiling reveals macrophage and dendritic cell heterogeneity in zebrafish.跨器官单细胞转录组谱分析揭示斑马鱼中巨噬细胞和树突状细胞的异质性。
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10
Hnf4 activates mimetic-cell enhancers to recapitulate gut and liver development within the thymus.Hnf4 激活模拟细胞增强子,在胸腺内再现肠道和肝脏的发育。
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