Martínez-Carranza Markel, Vialle Léa, Madru Clément, Cordier Florence, Tekpinar Ayten Dizkirici, Haouz Ahmed, Legrand Pierre, Le Meur Rémy A, England Patrick, Dulermo Rémi, Guijarro J Iñaki, Henneke Ghislaine, Sauguet Ludovic
Architecture and Dynamics of Biological Macromolecules, Institut Pasteur, Université Paris Cité, CNRS UMR 3528, Paris, France.
Univ Brest, Ifremer, CNRS, Biologie et Ecologie des Ecoystèmes marins profonds (BEEP), Plouzané, France.
Nat Commun. 2024 Dec 30;15(1):10926. doi: 10.1038/s41467-024-55365-w.
Replication Protein A (RPA) plays a pivotal role in DNA replication by coating and protecting exposed single-stranded DNA, and acting as a molecular hub that recruits additional replication factors. We demonstrate that archaeal RPA hosts a winged-helix domain (WH) that interacts with two key actors of the replisome: the DNA primase (PriSL) and the replicative DNA polymerase (PolD). Using an integrative structural biology approach, combining nuclear magnetic resonance, X-ray crystallography and cryo-electron microscopy, we unveil how RPA interacts with PriSL and PolD through two distinct surfaces of the WH domain: an evolutionarily conserved interface and a novel binding site. Finally, RPA is shown to stimulate the activity of PriSL in a WH-dependent manner. This study provides a molecular understanding of the WH-mediated regulatory activity in central replication factors such as RPA, which regulate genome maintenance in Archaea and Eukaryotes.
复制蛋白A(RPA)通过包裹和保护暴露的单链DNA,并作为招募其他复制因子的分子枢纽,在DNA复制中发挥关键作用。我们证明古细菌RPA拥有一个翼状螺旋结构域(WH),该结构域与复制体的两个关键因子相互作用:DNA引发酶(PriSL)和复制性DNA聚合酶(PolD)。通过结合核磁共振、X射线晶体学和冷冻电子显微镜的综合结构生物学方法,我们揭示了RPA如何通过WH结构域的两个不同表面与PriSL和PolD相互作用:一个进化上保守的界面和一个新的结合位点。最后,RPA被证明以WH依赖的方式刺激PriSL的活性。这项研究提供了对WH介导的在诸如RPA等中心复制因子中的调节活性的分子理解,RPA在古细菌和真核生物中调节基因组维持。