Cerezo I M, Herrada E A, Fernández-Gracia J, Sáez-Casado M I, Martos-Sitcha J A, Moriñigo M A, Tapia-Paniagua S T
Department of Microbiology, Faculty of Sciences, CEI·MAR-International Campus of Excellence in Marine Science, University of Malaga, Málaga, Spain.
Bioinformatic Unit of - Super Computer and Bioinnovation Center (SCBI), University of Malaga, Málaga, Spain.
Sci Rep. 2024 Dec 30;14(1):31696. doi: 10.1038/s41598-024-81822-z.
The inclusion of microalgae in functional fish diets has a notable impact on the welfare, metabolism and physiology of the organism. The microbial communities associated with the fish are directly influenced by the host's diet, and further understanding the impact on mucosal microbiota is needed. This study aimed to analyze the microbiota associated with the skin and gills of Sparus aurata fed a diet containing 10% microalgae. Sequencing of the V3-V4 variable region of 16S rDNA molecules was employed to determine the composition of the microbial communities. The study employed bioinformatics tools to explore the taxonomic composition and interactions of the microbiota, emphasizing the integration of taxonomic analysis and abundance correlation networks as crucial for understanding microbial community dynamics and the impact of functional diets. The results indicated that there were not changes in the composition of the skin and gill microbiota. However, notable differences were observed in the bacterial interaction networks. The skin and gill networks exhibited distinct overall patterns influenced by their respective environments and functions. The gill network showed a highly connected and redundant structure, increasing its resilience, while the skin network showed a more fragmented structure, suggesting a potentially greater vulnerability to perturbations. Key taxa, such as Acinetobacter and Polaribacter, were identified as critical for maintaining the stability and functionality of these microbial ecosystems. Polaribacter could demonstrate potential protection against pathogens through negative interactions. These tentative studies open up an additional avenue to consider, such as the interactions among bacterial communities, as well as new proposals to corroborate these findings. These observations underline the importance of understanding the composition and interactions within bacterial groups to fully grasp the dynamics of microbial communities.
在功能性鱼类饲料中添加微藻对生物体的健康、新陈代谢和生理机能有显著影响。与鱼类相关的微生物群落直接受到宿主饮食的影响,因此需要进一步了解其对黏膜微生物群的影响。本研究旨在分析喂食含10%微藻饲料的金头鲷皮肤和鳃相关的微生物群。采用对16S rDNA分子的V3 - V4可变区进行测序来确定微生物群落的组成。该研究利用生物信息学工具探索微生物群的分类组成和相互作用,强调分类分析和丰度相关网络的整合对于理解微生物群落动态和功能性饲料影响的重要性。结果表明,皮肤和鳃微生物群的组成没有变化。然而,在细菌相互作用网络中观察到显著差异。皮肤和鳃网络呈现出受各自环境和功能影响的不同整体模式。鳃网络显示出高度连接和冗余的结构,增强了其恢复力,而皮肤网络则显示出更碎片化的结构,表明其对干扰的潜在脆弱性可能更大。关键分类群,如不动杆菌属和极地杆菌属,被确定为维持这些微生物生态系统稳定性和功能的关键。极地杆菌属可通过负相互作用表现出对病原体的潜在保护作用。这些初步研究开辟了一个新的思考方向,如细菌群落之间的相互作用,以及证实这些发现的新建议。这些观察结果强调了理解细菌群体内部组成和相互作用对于全面掌握微生物群落动态的重要性。