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病毒的X射线晶体学

X-Ray Crystallography of Viruses.

作者信息

Verdaguer Núria, Ferrer-Orta Cristina, Garriga Damià

机构信息

Institut de Biologia Molecular de Barcelona (CSIC), Parc Científic de Barcelona, Barcelona, Spain.

ALBA Synchrotron Light Source, Cerdanyola del Vallès, Spain.

出版信息

Subcell Biochem. 2024;105:135-169. doi: 10.1007/978-3-031-65187-8_4.

Abstract

Since the 1970s and for about 40 years, X-ray crystallography has been by far the most powerful approach for determining virus structures at close to atomic resolutions. Information provided by these studies has deeply and extensively enriched and shaped our vision of the virus world. In turn, the ever-increasing complexity and size of the virus structures being investigated have constituted a major driving force for methodological and conceptual developments in X-ray macromolecular crystallography (MX). Landmarks of the structure determination of viral particles, such as the ones from the first animal viruses or from the first membrane-containing viruses, have often been associated with methodological breakthroughs in X-ray crystallography.In recent years, the advent of new detectors with fast frame rate, high sensitivity, and low-noise background has changed the way MX data is collected, enabling new types of studies at X-ray free-electron laser and synchrotron facilities. In parallel, a very high degree of automation has been established at most MX synchrotron beamlines, allowing the screening of large number of crystals with very high throughputs. This has proved crucial for fragment-based drug design projects, of special relevance for the identification of new antiviral drugs.This change in the usage of X-ray crystallography is also mirrored in the recent advances in cryo-electron microscopy (cryo-EM), which can nowadays produce macromolecule structures at resolutions comparable to those obtained by MX. Since this technique is especially amenable for large protein assemblies, cryo-EM has progressively turned into the favored technique to study the structure of large viral particles at high resolution.In this chapter, we present the common ground of proteins and virus crystallography with an emphasis in the peculiarities of virus-related studies.

摘要

自20世纪70年代以来的大约40年里,X射线晶体学一直是迄今为止用于确定接近原子分辨率的病毒结构的最强大方法。这些研究提供的信息深刻而广泛地丰富并塑造了我们对病毒世界的认知。反过来,所研究的病毒结构日益增加的复杂性和规模,构成了X射线大分子晶体学(MX)在方法和概念发展方面的主要驱动力。病毒颗粒结构测定的里程碑,例如来自首批动物病毒或首批含膜病毒的结构测定,常常与X射线晶体学的方法突破相关联。近年来,具有快速帧率、高灵敏度和低噪声背景的新型探测器的出现,改变了MX数据的收集方式,使得在X射线自由电子激光和同步加速器设施中能够开展新型研究。与此同时,大多数MX同步加速器光束线都建立了非常高的自动化程度,能够以非常高的通量筛选大量晶体。这已被证明对基于片段的药物设计项目至关重要,对新型抗病毒药物的鉴定具有特殊意义。X射线晶体学使用方面的这种变化也反映在低温电子显微镜(cryo-EM)的最新进展中,如今cryo-EM能够产生与MX获得的分辨率相当的大分子结构。由于这项技术特别适用于大型蛋白质组装体,cryo-EM已逐渐成为高分辨率研究大型病毒颗粒结构的首选技术。在本章中,我们介绍蛋白质晶体学和病毒晶体学的共同基础,重点阐述与病毒相关研究的特殊性。

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