Suppr超能文献

揭示系统性硬化症和肺癌之间的共同基因。

Unveiling the shared genes between systemic sclerosis and lung cancer.

作者信息

Pan Pengfei, Liu Xin, Wang Yun, Wang Huixuan, Xu Cheng, Lu Junhui

机构信息

Department of Rheumatology and Immunology, The Affiliated Huai'an Hospital of Xuzhou Medical University, The Second People's Hospital of Huai'an, Huai'an, China.

Department of Dermatology, The Affiliated Huai'an Hospital of Xuzhou Medical University, The Second People's Hospital of Huai'an, Huai'an, China.

出版信息

Front Med (Lausanne). 2024 Dec 18;11:1431642. doi: 10.3389/fmed.2024.1431642. eCollection 2024.

Abstract

The risk of lung cancer is significantly increased in patients with systemic sclerosis (SSc), yet the specific genes underlying this association remain unexplored. Our study aims to identify genes shared by SSc and lung cancer. We identified differentially expressed genes (DEGs) from SSc and lung adenocarcinoma (LUAD) datasets (SSc: GSE95065, LUAD: GSE136043) in the GEO database. We found shared genes by intersecting top genes in protein-protein interaction networks by the STRING database. The area under the ROC curve (AUC) was calculated for each shared gene in validation datasets (SSc: GSE231692; LUAD: GSE43458), identifying PRKG2 as the core shared gene. We used the UALCAN platform to assess PRKG2 expression in LUAD patients at various stages and lymph node metastasis states, and compared disease-free survival (DFS) between low and high PRKG2 expression LUAD groups. PRKG2 was overexpressed in A549 cells to study its impact on lung cancer cell proliferation and invasion . We identified seven shared genes (SCN7A, AGTR1, WIF1, PRKG2, LTF, AQP4, COL10A1), with the AUC for PRKG2 exceeding 0.93 in both diseases (SSc AUC = 0.973; LUAD AUC = 0.939). The PRKG2 expression levels of LUAD patients with different clinical stages and lymph node metastasis states were consistently lower than those observed in normal individuals. The DFS of LUAD patients in the high PRKG2 expression group was higher than that in the low expression group ( = 0.028). experiments confirmed elevated PRKG2 expression inhibits the proliferation and invasion of lung cancer cells. PRKG2 is one of the genes shared by SSc and lung cancer, affecting the proliferation and invasion of lung cancer cells.

摘要

系统性硬化症(SSc)患者患肺癌的风险显著增加,但这种关联背后的具体基因仍未被探索。我们的研究旨在确定SSc和肺癌共有的基因。我们从基因表达综合数据库(GEO)中的SSc和肺腺癌(LUAD)数据集中(SSc:GSE95065,LUAD:GSE136043)鉴定出差异表达基因(DEG)。我们通过STRING数据库在蛋白质 - 蛋白质相互作用网络中交叉分析顶级基因来找到共享基因。在验证数据集(SSc:GSE231692;LUAD:GSE43458)中为每个共享基因计算ROC曲线下面积(AUC),确定PRKG2为核心共享基因。我们使用UALCAN平台评估不同阶段和淋巴结转移状态的LUAD患者中PRKG2的表达,并比较PRKG2低表达和高表达LUAD组之间的无病生存期(DFS)。在A549细胞中过表达PRKG2以研究其对肺癌细胞增殖和侵袭的影响。我们鉴定出七个共享基因(SCN7A、AGTR1、WIF1、PRKG2、LTF、AQP4、COL10A1),PRKG2在两种疾病中的AUC均超过0.93(SSc的AUC = 0.973;LUAD的AUC = 0.939)。不同临床阶段和淋巴结转移状态的LUAD患者的PRKG2表达水平始终低于正常个体。PRKG2高表达组的LUAD患者的DFS高于低表达组(P = 0.028)。实验证实PRKG2表达升高可抑制肺癌细胞的增殖和侵袭。PRKG2是SSc和肺癌共有的基因之一,影响肺癌细胞的增殖和侵袭。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0def/11688373/e1c6e222ec82/fmed-11-1431642-g003.jpg

相似文献

1
Unveiling the shared genes between systemic sclerosis and lung cancer.
Front Med (Lausanne). 2024 Dec 18;11:1431642. doi: 10.3389/fmed.2024.1431642. eCollection 2024.
3
[Construction and Validation of A Prognostic Model for Lung Adenocarcinoma 
Based on Ferroptosis-related Genes].
Zhongguo Fei Ai Za Zhi. 2025 Jan 20;28(1):22-32. doi: 10.3779/j.issn.1009-3419.2025.102.04.
5
A novel ferroptosis-related genes model for prognosis prediction of lung adenocarcinoma.
BMC Pulm Med. 2021 Jul 13;21(1):229. doi: 10.1186/s12890-021-01588-2.
6
Development and Validation of a Ferroptosis-Related Gene Signature for Overall Survival Prediction in Lung Adenocarcinoma.
Front Cell Dev Biol. 2021 Jul 7;9:684259. doi: 10.3389/fcell.2021.684259. eCollection 2021.
9
The high expression of miR-31 in lung adenocarcinoma inhibits the malignancy of lung adenocarcinoma tumor stem cells.
Biochem Biophys Rep. 2021 Aug 30;28:101122. doi: 10.1016/j.bbrep.2021.101122. eCollection 2021 Dec.

本文引用的文献

1
A holistic approach to understanding immune-mediated inflammatory diseases: bioinformatic tools to integrate omics data.
Comput Struct Biotechnol J. 2023 Nov 28;23:96-105. doi: 10.1016/j.csbj.2023.11.045. eCollection 2024 Dec.
3
An interleukin 6 responsive plasma cell signature is associated with disease progression in systemic sclerosis interstitial lung disease.
iScience. 2023 Oct 5;26(11):108133. doi: 10.1016/j.isci.2023.108133. eCollection 2023 Nov 17.
5
Identifying and analyzing the key genes shared by papillary thyroid carcinoma and Hashimoto's thyroiditis using bioinformatics methods.
Front Endocrinol (Lausanne). 2023 May 31;14:1140094. doi: 10.3389/fendo.2023.1140094. eCollection 2023.
6
Systemic sclerosis.
Lancet. 2023 Jan 28;401(10373):304-318. doi: 10.1016/S0140-6736(22)01692-0. Epub 2022 Nov 25.
7
Exploring the molecular mechanisms and shared gene signatures between rheumatoid arthritis and diffuse large B cell lymphoma.
Front Immunol. 2022 Oct 31;13:1036239. doi: 10.3389/fimmu.2022.1036239. eCollection 2022.
9
Systemic Sclerosis Association with Malignancy.
Clin Rev Allergy Immunol. 2022 Dec;63(3):398-416. doi: 10.1007/s12016-022-08930-4. Epub 2022 Sep 19.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验