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从家畜和野生动物中分离出的[具体物质]的基因组和代谢特征。 (注:原文中“isolated from...”前缺少具体所指物质,翻译时补充了[具体物质]使句子更完整通顺)

Genomic and metabolic characterization of isolated from domestic and wild animals.

作者信息

Magossi Gabriela, Gzyl Katherine E, Holman Devin B, Nagaraja T G, Amachawadi Raghavendra, Amat Samat

机构信息

Microbiological Sciences Department, North Dakota State University, Fargo, North Dakota, USA.

Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, Lacombe, Alberta, Canada.

出版信息

Appl Environ Microbiol. 2025 Jan 31;91(1):e0172524. doi: 10.1128/aem.01725-24. Epub 2024 Dec 31.

Abstract

is an important bacterial pathogen implicated in infections such as mastitis, metritis, pneumonia, and liver abscesses in both domestic and wild animals, as well as endocarditis and prosthetic joint infections in humans. Understanding the genomic and metabolic features that enable to colonize different anatomical sites within a host and its inter-kingdom transmission and survival is important for the effective control of this pathogen. We employed whole-genome sequencing, phenotype microarrays, and antimicrobial susceptibility testing to identify genomic, metabolic and phenotypic features, and antimicrobial resistance (AMR) genes in recovered from different livestock, companion, and wildlife animals. For comparative genomic analysis, 83 genomes, including 60 isolated in the current study and 23 publicly available genomes were evaluated. These genomes represented strains originating from 16 different body sites of 11 different animal hosts (e.g., cattle, swine, ovine, deer, bison, horse, chamois, and cat). Additionally, 49 isolates (cattle, sheep, deer, swine, and cats) were evaluated for phenotypic AMR using disk diffusion, and for metabolic profiling using the Biology GENIII MicroPlates. The strains were found not to be host- or body site-specific. The presence of conserved virulence genes ( and ), as well as genotypic and phenotypic AMR may contribute to the ability of to cause infections in livestock, wildlife, and pets. Most of the tested isolates metabolized diverse carbon sources and chemical compounds, suggesting that this metabolic versatility may enhance the survival, competitiveness, and pathogenic potential of .IMPORTANCE is an important animal pathogen with zoonotic potential, posing a significant health concern to both animals and humans due to its ability to cause infections across different animal host species and tissues. Current understanding of this pathogen's adaptability and survival mechanisms is limited. Here, we evaluated the genomic, virulence, metabolic, and antimicrobial resistance (AMR) characteristics of recovered from 16 different body sites of 11 different animal hosts (livestock, companion, and wild animals). We identified multiple AMR and virulence genes that may enable for sustained infection and transmission. Additionally, strains displayed metabolic versatility which could also contribute to its ability to thrive in diverse environments. Understanding the genomic and metabolic, and AMR characteristics that enable to colonize different anatomical sites within a host and its transmission between different animal species is important for the effective control of this pathogen.

摘要

是一种重要的细菌病原体,与家畜和野生动物的乳腺炎、子宫炎、肺炎及肝脓肿感染有关,也与人类的心内膜炎和人工关节感染有关。了解使其能够在宿主体内不同解剖部位定殖以及进行跨界传播和存活的基因组和代谢特征,对于有效控制这种病原体至关重要。我们采用全基因组测序、表型微阵列和抗菌药物敏感性测试,以鉴定从不同家畜、伴侣动物和野生动物中分离出的菌株的基因组、代谢和表型特征以及抗菌药物耐药性(AMR)基因。为了进行比较基因组分析,评估了83个菌株的基因组,包括本研究中分离的60个和23个公开可用的基因组。这些基因组代表了源自11种不同动物宿主(如牛、猪、羊、鹿、野牛、马、羚羊和猫)16个不同身体部位的菌株。此外,使用纸片扩散法对49个分离株(牛、羊、鹿、猪和猫)进行了表型AMR评估,并使用Biolog GENIII微孔板进行了代谢谱分析。发现这些菌株并非宿主或身体部位特异性的。保守毒力基因(和)的存在,以及基因型和表型AMR可能有助于该菌在牲畜、野生动物和宠物中引起感染。大多数测试分离株能够代谢多种碳源和化合物,这表明这种代谢多样性可能会增强该菌的存活能力、竞争力和致病潜力。重要性是一种具有人畜共患病潜力的重要动物病原体,由于其能够在不同动物宿主物种和组织中引起感染,对动物和人类的健康都构成了重大威胁。目前对这种病原体的适应性和存活机制的了解有限。在此,我们评估了从11种不同动物宿主(家畜、伴侣动物和野生动物)的16个不同身体部位分离出的菌株的基因组、毒力、代谢和抗菌药物耐药性(AMR)特征。我们鉴定出多个可能使该菌能够持续感染和传播的AMR和毒力基因。此外,该菌表现出代谢多样性,这也可能有助于其在不同环境中茁壮成长。了解使其能够在宿主体内不同解剖部位定殖以及在不同动物物种之间传播的基因组、代谢和AMR特征,对于有效控制这种病原体至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b50/11784230/98f09f557660/aem.01725-24.f001.jpg

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