从畜禽废水中分离出的除臭细菌TDY-1菌株的全基因组序列
Complete genome sequence of strain TDY-1, an odor-reducing bacterium isolated from livestock wastewater.
作者信息
Han Kook-Il, Nam Young Ho, Kim Eui-Jin
机构信息
Using Technology Development Department, Nakdonggang National Institute of Biological Resources (NNIBR), Sangju, South Korea.
出版信息
Microbiol Resour Announc. 2025 Feb 11;14(2):e0102724. doi: 10.1128/mra.01027-24. Epub 2024 Dec 31.
Abstract
We report the complete genome sequence of TDY-1 an odor-reducing strain isolated from livestock wastewater on a pig farm. Its genome consists of a 2.97-Mb chromosome.
摘要
我们报告了从猪场的牲畜废水中分离出的气味减少菌株TDY-1的完整基因组序列。其基因组由一条2.97兆碱基对的染色体组成。
相似文献
1
Complete genome sequence of strain TDY-1, an odor-reducing bacterium isolated from livestock wastewater.从畜禽废水中分离出的除臭细菌TDY-1菌株的全基因组序列
Microbiol Resour Announc. 2025 Feb 11;14(2):e0102724. doi: 10.1128/mra.01027-24. Epub 2024 Dec 31.
2
Pseudoxanthomonas jiangsuensis sp. nov., a DDT-degrading bacterium isolated from a long-term DDT-polluted soil.江苏假单胞菌新种，一种从长期受滴滴涕污染的土壤中分离出的滴滴涕降解菌。
Curr Microbiol. 2011 Jun;62(6):1760-6. doi: 10.1007/s00284-011-9925-1. Epub 2011 Mar 29.
3
Pseudoxanthomonas humi sp. nov., a bacterium isolated from rhizospheric soil of Fraxinus chinensis in Gyeonggi Province, South Korea.潮湿假单胞菌新种，一种从韩国京畿道白蜡树根际土壤中分离出的细菌。
Arch Microbiol. 2015 Dec;197(10):1165-72. doi: 10.1007/s00203-015-1157-5. Epub 2015 Oct 6.
4
Pseudoxanthomonas koreensis sp. nov. and Pseudoxanthomonas daejeonensis sp. nov.新种韩国假黄单胞菌和大田假黄单胞菌
Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):787-791. doi: 10.1099/ijs.0.63210-0.
5
Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity.具有环状脂肽介导的抗真菌活性的植物促生假单胞菌 k 的基因组研究。
Microbiologyopen. 2020 Sep;9(9):e1092. doi: 10.1002/mbo3.1092. Epub 2020 Jun 15.
6
Complete Genome Sequence of Pseudoxanthomonas suwonensis Strain J1, a Cellulose-Degrading Bacterium Isolated from Leaf- and Wood-Enriched Soil.从富含树叶和木材的土壤中分离出的纤维素降解细菌——水原假单胞菌菌株J1的全基因组序列
Genome Announc. 2015 Jun 11;3(3):e00614-15. doi: 10.1128/genomeA.00614-15.
7
Draft genome sequence of the strain 16-537536, isolated from a patient with bronchiectasis and its relationship to the Pseudomonas koreensis group of the Pseudomonas fluorescens complex.从一名支气管扩张患者分离出的16-537536菌株的基因组序列草图及其与荧光假单胞菌复合体中韩国假单胞菌组的关系。
BMC Res Notes. 2020 Jan 6;13(1):10. doi: 10.1186/s13104-019-4863-2.
8
Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59.BTEX 降解菌恶臭假单胞菌 BD-a59 的全基因组序列。
J Bacteriol. 2012 Jan;194(2):544. doi: 10.1128/JB.06436-11.
9
Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.嗜盐水生芽孢杆菌新属、新种，一种来自高盐湖的中度嗜盐细菌，以及将韩国维吉芽孢杆菌重新分类为韩国水生芽孢杆菌新组合和白色维吉芽孢杆菌重新分类为白色水生芽孢杆菌新组合。
Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3616-3623. doi: 10.1099/ijs.0.065375-0. Epub 2014 Jul 25.
10
Whole-Genome Sequencing of Pseudomonas koreensis Isolated from Diseased Tor tambroides.从患病的波纹唇鱼中分离出的朝鲜假单胞菌的全基因组测序。
Curr Microbiol. 2023 Jun 25;80(8):255. doi: 10.1007/s00284-023-03354-5.
本文引用的文献
1
BUSCO: Assessing Genomic Data Quality and Beyond.BUSCO：评估基因组数据质量及其他。
Curr Protoc. 2021 Dec;1(12):e323. doi: 10.1002/cpz1.323.
2
Emissions, measurement, and control of odor in livestock farms: A review.畜禽养殖场恶臭排放、测定和控制研究进展。
Sci Total Environ. 2021 Jul 1;776:145735. doi: 10.1016/j.scitotenv.2021.145735. Epub 2021 Feb 9.
3
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
6
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
7
Circos: an information aesthetic for comparative genomics.Circos：一种用于比较基因组学的信息美学。
Genome Res. 2009 Sep;19(9):1639-45. doi: 10.1101/gr.092759.109. Epub 2009 Jun 18.
8
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.GeneMarkS：一种用于预测微生物基因组中基因起始位点的自训练方法。对在调控区域中寻找序列基序的启示。
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
Zotero 插件